Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 110.99683 * 2 1 4 4 C 1.46896 * 111.00186 * 123.94970 * 2 1 3 5 5 C 1.53000 * 109.47080 * 66.05048 * 4 2 1 6 6 C 1.53004 * 109.47395 * 183.92342 * 5 4 2 7 7 H 1.08991 * 109.90768 * 56.68457 * 6 5 4 8 8 C 1.53997 * 109.91486 * 295.57830 * 6 5 4 9 9 H 1.09001 * 110.30399 * 0.79524 * 8 6 5 10 10 N 1.46899 * 110.30592 * 122.85477 * 8 6 5 11 11 C 1.54592 * 105.14133 * 241.87232 * 8 6 5 12 12 H 1.08999 * 110.72124 * 263.60085 * 11 8 6 13 13 C 1.50696 * 110.72091 * 140.31560 * 11 8 6 14 14 H 1.07996 * 120.00650 * 0.02562 * 13 11 8 15 15 C 1.37880 * 119.99736 * 180.02562 * 13 11 8 16 16 N 1.31511 * 120.00042 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99919 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47169 * 89.99964 * 17 15 13 19 19 H 1.48502 * 109.46997 * 210.00022 * 17 15 13 20 20 H 1.48499 * 109.47140 * 330.00018 * 17 15 13 21 21 C 1.54933 * 102.92059 * 21.96132 * 11 8 6 22 22 N 1.47897 * 109.91590 * 177.78829 * 6 5 4 23 23 C 1.46904 * 111.00429 * 333.50589 * 22 6 5 24 24 H 1.09001 * 109.47539 * 296.04671 * 1 2 3 25 25 H 1.08999 * 109.47351 * 56.04715 * 1 2 3 26 26 H 1.08998 * 109.47034 * 176.04555 * 1 2 3 27 27 H 1.09000 * 109.47189 * 183.95163 * 3 2 1 28 28 H 1.08996 * 109.46981 * 303.94853 * 3 2 1 29 29 H 1.09004 * 109.47210 * 63.95407 * 3 2 1 30 30 H 1.09006 * 109.47374 * 306.05415 * 4 2 1 31 31 H 1.09003 * 109.47715 * 186.04634 * 4 2 1 32 32 H 1.09001 * 109.47446 * 63.91653 * 5 4 2 33 33 H 1.09006 * 109.46933 * 303.92052 * 5 4 2 34 34 H 1.00895 * 111.00287 * 180.02562 * 10 8 6 35 35 H 1.00898 * 111.00530 * 303.95946 * 10 8 6 36 36 H 0.97004 * 119.99948 * 180.02562 * 16 15 13 37 37 H 1.09001 * 110.67480 * 81.02132 * 21 11 8 38 38 H 1.09003 * 110.66772 * 203.98297 * 21 11 8 39 39 H 1.09000 * 109.46712 * 66.33620 * 23 22 6 40 40 H 1.09000 * 109.47344 * 186.33587 * 23 22 6 41 41 H 1.09000 * 109.46906 * 306.33897 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2425 0.9704 6 6 2.0941 -3.0244 2.2015 7 1 1.6523 -2.5958 3.1010 8 6 3.6303 -2.9848 2.3014 9 1 4.0476 -2.3982 1.4830 10 7 4.0428 -2.4210 3.5937 11 6 4.0804 -4.4595 2.1887 12 1 4.2382 -4.8911 3.1771 13 6 5.3271 -4.5738 1.3499 14 1 5.7757 -3.6878 0.9256 15 6 5.8951 -5.8097 1.1241 16 7 5.3486 -6.8888 1.6404 17 14 7.4409 -5.9514 0.0850 18 1 8.6366 -5.8375 0.9582 19 1 7.4549 -7.2666 -0.6046 20 1 7.4600 -4.8628 -0.9249 21 6 2.8794 -5.1351 1.4807 22 7 1.7000 -4.4442 2.0741 23 6 0.5152 -4.5869 1.2173 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0827 1.3434 -0.0708 28 1 1.5897 1.9163 -0.8525 29 1 1.7042 1.8724 0.9233 30 1 1.5610 -0.3872 2.0629 31 1 3.0797 -0.6610 1.1757 32 1 2.1229 -2.6395 0.0821 33 1 0.5513 -2.3406 0.8625 34 1 5.0484 -2.3898 3.6701 35 1 3.6413 -1.5060 3.7337 36 1 5.7485 -7.7582 1.4819 37 1 2.9229 -4.9672 0.4045 38 1 2.8533 -6.2023 1.7014 39 1 0.7682 -4.3000 0.1967 40 1 0.1798 -5.6239 1.2307 41 1 -0.2816 -3.9425 1.5889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259701316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = 12.202125 kcal Electronic energy + Delta-G solvation = -18633.845702 eV Core-core repulsion = 15969.560752 eV Total energy + Delta-G solvation = -2664.284951 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.11175 -37.14639 -33.61930 -32.78447 -31.13247 -29.13750 -27.66662 -26.55024 -25.47330 -23.33549 -23.14270 -21.00817 -19.62625 -18.81143 -16.53797 -15.61945 -15.52009 -15.18564 -14.62435 -14.53720 -14.27033 -13.85748 -13.66463 -13.13622 -13.08776 -12.47901 -12.16979 -12.11042 -11.80265 -11.67437 -11.47982 -11.23981 -10.98972 -10.87539 -10.76594 -10.62787 -10.37009 -10.06477 -9.91479 -9.09564 -8.97035 -8.40351 -8.37166 -7.87633 -7.49811 -6.01813 -4.05417 3.30060 3.37206 3.39715 3.94311 4.42248 4.84691 5.06843 5.08545 5.19160 5.28582 5.32174 5.38150 5.45639 5.58335 5.60721 5.73982 5.77275 5.78568 5.83921 5.90596 6.06412 6.11321 6.26438 6.34826 6.38155 6.55525 6.74960 6.92573 7.00579 7.03408 7.18932 7.54184 7.66365 7.75072 7.88386 8.00353 8.15319 8.24888 8.48319 8.98128 9.58827 11.07770 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.006853 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.064486 B = 4084.669887 C = 4494.756255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.060 3.940 5 C -0.139 4.139 6 C 0.075 3.925 7 H 0.075 0.925 8 C 0.086 3.914 9 H 0.034 0.966 10 N -0.837 5.837 11 C 0.062 3.938 12 H 0.051 0.949 13 C -0.518 4.518 14 H 0.053 0.947 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.054 3.946 22 N -0.519 5.519 23 C 0.017 3.983 24 H 0.023 0.977 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.341 0.659 35 H 0.318 0.682 36 H 0.261 0.739 37 H 0.028 0.972 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.059 0.941 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 11.951 -1.852 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.068 4.068 5 C -0.178 4.178 6 C -0.035 4.035 7 H 0.093 0.907 8 C -0.026 4.026 9 H 0.052 0.948 10 N -0.366 5.366 11 C 0.043 3.957 12 H 0.070 0.930 13 C -0.557 4.557 14 H 0.071 0.929 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.073 4.073 22 N -0.242 5.242 23 C -0.132 4.132 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.551 10.640 -1.456 13.727 hybrid contribution 1.154 1.355 -1.335 2.225 sum -7.396 11.995 -2.790 14.365 Atomic orbital electron populations 1.22418 0.87753 1.02404 0.99998 1.61975 1.07796 1.13460 1.43945 1.22368 1.00892 0.88997 1.00083 1.22154 1.00167 0.94053 0.90460 1.22303 1.01139 0.93967 1.00392 1.22432 0.95999 0.89275 0.95781 0.90717 1.22507 0.92159 0.99435 0.88463 0.94812 1.58828 1.14979 1.27611 1.35144 1.19568 0.91839 0.87206 0.97122 0.93047 1.21120 1.09830 0.92776 1.31927 0.92921 1.24969 0.97030 0.95977 0.95691 1.69962 1.39849 0.98185 1.44241 0.86655 0.83754 0.77394 0.80552 1.20658 1.21223 1.20040 1.23467 0.88407 0.99645 0.95767 1.65159 1.05005 1.08366 1.45712 1.22466 0.94303 1.01129 0.95274 0.95871 0.91750 0.91055 0.91373 0.91620 0.95904 0.95057 0.90756 0.91051 0.91718 0.84601 0.87115 0.92938 0.95412 0.89982 0.95660 0.92222 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.33 60.06 0.56 0.81 16 2 N -0.55 -7.17 5.02 -251.26 -1.26 -8.43 16 3 C 0.03 0.27 9.57 60.07 0.57 0.85 16 4 C 0.06 0.85 4.69 -3.83 -0.02 0.83 16 5 C -0.14 -2.23 3.35 -26.73 -0.09 -2.32 16 6 C 0.08 1.39 2.96 -66.64 -0.20 1.19 16 7 H 0.07 1.37 7.90 -51.93 -0.41 0.96 16 8 C 0.09 1.75 2.86 -66.36 -0.19 1.56 16 9 H 0.03 0.72 6.14 -51.93 -0.32 0.40 16 10 N -0.84 -15.24 9.14 -3.52 -0.03 -15.28 16 11 C 0.06 1.56 2.61 -89.92 -0.24 1.32 16 12 H 0.05 1.47 8.06 -51.93 -0.42 1.05 16 13 C -0.52 -14.03 8.48 -34.44 -0.29 -14.32 16 14 H 0.05 1.41 7.55 -52.49 -0.40 1.02 16 15 C 0.07 1.81 5.36 -17.82 -0.10 1.72 16 16 N -0.88 -25.39 12.42 55.43 0.69 -24.70 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 C 0.05 1.30 5.47 -1.63 -0.01 1.29 16 22 N -0.52 -10.67 5.56 -230.36 -1.28 -11.95 16 23 C 0.02 0.30 8.32 60.07 0.50 0.80 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.07 0.81 6.39 -51.93 -0.33 0.48 16 27 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.07 1.11 6.77 -51.93 -0.35 0.76 16 32 H 0.07 1.32 7.85 -51.93 -0.41 0.91 16 33 H 0.06 0.96 4.50 -51.93 -0.23 0.73 16 34 H 0.34 6.15 9.08 -39.29 -0.36 5.79 16 35 H 0.32 4.83 8.99 -39.29 -0.35 4.48 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.03 0.69 7.78 -51.93 -0.40 0.28 16 38 H 0.08 2.17 7.65 -51.93 -0.40 1.77 16 39 H 0.02 0.43 6.66 -51.93 -0.35 0.08 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.80 7.37 -51.93 -0.38 0.42 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -28.77 313.92 -8.87 -37.63 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.20 Total: 8.08 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 0.51 Total: -6.27 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -1.89 Total: -60.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.77 -8.87 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259701316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.837 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds