Wall clock time and date at job start Mon Mar 30 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 110.99683 * 2 1 4 4 C 1.46896 * 111.00186 * 123.94970 * 2 1 3 5 5 C 1.53000 * 109.47080 * 66.05048 * 4 2 1 6 6 C 1.53004 * 109.47395 * 183.92342 * 5 4 2 7 7 H 1.08991 * 109.90768 * 56.68457 * 6 5 4 8 8 C 1.53997 * 109.91486 * 295.57830 * 6 5 4 9 9 H 1.09001 * 110.30399 * 0.79524 * 8 6 5 10 10 N 1.46899 * 110.30592 * 122.85477 * 8 6 5 11 11 C 1.54592 * 105.14133 * 241.87232 * 8 6 5 12 12 H 1.08999 * 110.72124 * 263.60085 * 11 8 6 13 13 C 1.50696 * 110.72091 * 140.31560 * 11 8 6 14 14 H 1.07996 * 120.00650 * 0.02562 * 13 11 8 15 15 C 1.37880 * 119.99736 * 180.02562 * 13 11 8 16 16 N 1.31511 * 120.00042 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99919 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47169 * 89.99964 * 17 15 13 19 19 H 1.48502 * 109.46997 * 210.00022 * 17 15 13 20 20 H 1.48499 * 109.47140 * 330.00018 * 17 15 13 21 21 C 1.54933 * 102.92059 * 21.96132 * 11 8 6 22 22 N 1.47897 * 109.91590 * 177.78829 * 6 5 4 23 23 C 1.46904 * 111.00429 * 333.50589 * 22 6 5 24 24 H 1.09001 * 109.47539 * 296.04671 * 1 2 3 25 25 H 1.08999 * 109.47351 * 56.04715 * 1 2 3 26 26 H 1.08998 * 109.47034 * 176.04555 * 1 2 3 27 27 H 1.09000 * 109.47189 * 183.95163 * 3 2 1 28 28 H 1.08996 * 109.46981 * 303.94853 * 3 2 1 29 29 H 1.09004 * 109.47210 * 63.95407 * 3 2 1 30 30 H 1.09006 * 109.47374 * 306.05415 * 4 2 1 31 31 H 1.09003 * 109.47715 * 186.04634 * 4 2 1 32 32 H 1.09001 * 109.47446 * 63.91653 * 5 4 2 33 33 H 1.09006 * 109.46933 * 303.92052 * 5 4 2 34 34 H 1.00895 * 111.00287 * 180.02562 * 10 8 6 35 35 H 1.00898 * 111.00530 * 303.95946 * 10 8 6 36 36 H 0.97004 * 119.99948 * 180.02562 * 16 15 13 37 37 H 1.09001 * 110.67480 * 81.02132 * 21 11 8 38 38 H 1.09003 * 110.66772 * 203.98297 * 21 11 8 39 39 H 1.09000 * 109.46712 * 66.33620 * 23 22 6 40 40 H 1.09000 * 109.47344 * 186.33587 * 23 22 6 41 41 H 1.09000 * 109.46906 * 306.33897 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2425 0.9704 6 6 2.0941 -3.0244 2.2015 7 1 1.6523 -2.5958 3.1010 8 6 3.6303 -2.9848 2.3014 9 1 4.0476 -2.3982 1.4830 10 7 4.0428 -2.4210 3.5937 11 6 4.0804 -4.4595 2.1887 12 1 4.2382 -4.8911 3.1771 13 6 5.3271 -4.5738 1.3499 14 1 5.7757 -3.6878 0.9256 15 6 5.8951 -5.8097 1.1241 16 7 5.3486 -6.8888 1.6404 17 14 7.4409 -5.9514 0.0850 18 1 8.6366 -5.8375 0.9582 19 1 7.4549 -7.2666 -0.6046 20 1 7.4600 -4.8628 -0.9249 21 6 2.8794 -5.1351 1.4807 22 7 1.7000 -4.4442 2.0741 23 6 0.5152 -4.5869 1.2173 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0827 1.3434 -0.0708 28 1 1.5897 1.9163 -0.8525 29 1 1.7042 1.8724 0.9233 30 1 1.5610 -0.3872 2.0629 31 1 3.0797 -0.6610 1.1757 32 1 2.1229 -2.6395 0.0821 33 1 0.5513 -2.3406 0.8625 34 1 5.0484 -2.3898 3.6701 35 1 3.6413 -1.5060 3.7337 36 1 5.7485 -7.7582 1.4819 37 1 2.9229 -4.9672 0.4045 38 1 2.8533 -6.2023 1.7014 39 1 0.7682 -4.3000 0.1967 40 1 0.1798 -5.6239 1.2307 41 1 -0.2816 -3.9425 1.5889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259701316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:56 Heat of formation + Delta-G solvation = -11.141761 kcal Electronic energy + Delta-G solvation = -18634.857969 eV Core-core repulsion = 15969.560752 eV Total energy + Delta-G solvation = -2665.297218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66261 -38.24405 -35.39185 -34.58692 -32.61337 -30.85438 -28.52747 -28.02376 -27.15731 -24.97720 -24.61637 -22.10830 -21.46688 -20.38151 -18.53483 -17.03159 -16.80440 -16.47387 -16.34938 -15.94170 -15.58330 -15.46425 -14.97199 -14.65147 -14.36492 -14.00203 -13.86147 -13.27242 -13.15686 -12.88143 -12.75850 -12.64781 -12.57264 -12.49789 -12.41069 -12.24584 -11.87912 -11.83185 -11.59367 -11.00517 -10.86811 -10.52587 -9.44872 -9.30232 -9.13528 -8.13457 -6.24073 1.40344 1.41093 1.50915 2.41704 2.97351 3.15645 3.32772 3.72243 3.92021 4.05537 4.14346 4.25844 4.32410 4.43227 4.48722 4.54872 4.58881 4.66093 4.67586 4.72314 4.73233 4.82115 4.93062 4.98457 4.99108 5.01107 5.12784 5.27055 5.43332 5.54182 5.66743 5.86469 6.02414 6.08509 6.11480 6.28483 6.36667 6.55445 6.81342 6.88784 7.43817 8.95944 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024027 B = 0.006853 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.064486 B = 4084.669887 C = 4494.756255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.567 5.567 3 C 0.025 3.975 4 C 0.068 3.932 5 C -0.125 4.125 6 C 0.080 3.920 7 H 0.086 0.914 8 C 0.098 3.902 9 H 0.027 0.973 10 N -0.838 5.838 11 C 0.056 3.944 12 H 0.009 0.991 13 C -0.531 4.531 14 H 0.051 0.949 15 C 0.016 3.984 16 N -0.916 5.916 17 Si 0.953 3.047 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.070 3.930 22 N -0.532 5.532 23 C 0.018 3.982 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.342 0.658 35 H 0.340 0.660 36 H 0.261 0.739 37 H 0.013 0.987 38 H 0.049 0.951 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 13.883 -2.329 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.291 5.291 3 C -0.123 4.123 4 C -0.061 4.061 5 C -0.164 4.164 6 C -0.030 4.030 7 H 0.104 0.896 8 C -0.014 4.014 9 H 0.045 0.955 10 N -0.369 5.369 11 C 0.037 3.963 12 H 0.027 0.973 13 C -0.569 4.569 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.778 3.222 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.058 4.058 22 N -0.256 5.256 23 C -0.130 4.130 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.395 12.608 -1.928 15.841 hybrid contribution 1.370 0.777 -1.151 1.951 sum -8.025 13.385 -3.078 15.907 Atomic orbital electron populations 1.22464 0.86495 1.02518 1.01134 1.61941 1.09103 1.14688 1.43409 1.22406 1.00683 0.87978 1.01233 1.21983 0.99610 0.92863 0.91627 1.22127 1.01735 0.94910 0.97660 1.22423 0.94499 0.88529 0.97500 0.89578 1.22236 0.93507 0.96366 0.89266 0.95480 1.58727 1.15290 1.29148 1.33688 1.19445 0.91962 0.90367 0.94565 0.97302 1.21424 1.10716 0.92815 1.31986 0.93053 1.25755 1.00065 0.95682 0.96858 1.70098 1.41301 0.98588 1.45529 0.85638 0.80078 0.77412 0.79023 1.19975 1.20959 1.19372 1.23031 0.90016 0.97996 0.94713 1.65062 1.04680 1.09476 1.46333 1.22537 0.93429 1.02150 0.94927 0.94993 0.90296 0.91514 0.91836 0.90165 0.94949 0.93800 0.91941 0.93725 0.89988 0.84522 0.84707 0.92972 0.96840 0.93288 0.95518 0.91994 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.33 127.69 1.19 1.61 16 2 N -0.57 -13.45 5.02 -948.84 -4.76 -18.21 16 3 C 0.02 0.47 9.57 127.69 1.22 1.70 16 4 C 0.07 1.76 4.69 86.30 0.40 2.17 16 5 C -0.13 -3.80 3.35 30.60 0.10 -3.70 16 6 C 0.08 2.87 2.96 45.06 0.13 3.01 16 7 H 0.09 2.95 7.90 -2.39 -0.02 2.93 16 8 C 0.10 4.00 2.86 45.79 0.13 4.13 16 9 H 0.03 1.16 6.14 -2.39 -0.01 1.14 16 10 N -0.84 -29.91 9.14 -165.04 -1.51 -31.42 16 11 C 0.06 2.91 2.61 -10.34 -0.03 2.88 16 12 H 0.01 0.53 8.06 -2.39 -0.02 0.51 16 13 C -0.53 -29.44 8.48 25.60 0.22 -29.22 16 14 H 0.05 2.79 7.55 -2.91 -0.02 2.77 16 15 C 0.02 0.89 5.36 84.66 0.45 1.34 16 16 N -0.92 -54.22 12.42 21.45 0.27 -53.95 16 17 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 C 0.07 3.50 5.47 86.55 0.47 3.97 16 22 N -0.53 -21.72 5.56 -882.73 -4.91 -26.62 16 23 C 0.02 0.59 8.32 127.69 1.06 1.65 16 24 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 26 H 0.07 1.33 6.39 -2.39 -0.02 1.31 16 27 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 28 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 29 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.04 1.04 8.12 -2.38 -0.02 1.02 16 31 H 0.06 1.77 6.77 -2.39 -0.02 1.76 16 32 H 0.04 1.61 7.85 -2.39 -0.02 1.59 16 33 H 0.08 2.21 4.50 -2.38 -0.01 2.20 16 34 H 0.34 12.21 9.08 -89.70 -0.81 11.40 16 35 H 0.34 9.67 8.99 -89.70 -0.81 8.86 16 36 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 37 H 0.01 0.69 7.78 -2.39 -0.02 0.67 16 38 H 0.05 2.72 7.65 -2.39 -0.02 2.70 16 39 H 0.03 0.87 6.66 -2.39 -0.02 0.85 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 2.23 7.37 -2.39 -0.02 2.22 16 Total: -1.00 -63.06 313.92 -4.13 -67.19 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.61 Total: 27.48 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.36 Total: -10.46 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -10.91 Total: -130.20 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -63.06 -4.13 -67.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259701316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.051 kcal (2) G-P(sol) polarization free energy of solvation -63.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds