Wall clock time and date at job start Mon Mar 30 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47500 * 269.99806 * 3 2 1 5 5 H 1.48503 * 109.47119 * 30.00080 * 3 2 1 6 6 H 1.48500 * 109.47073 * 149.99890 * 3 2 1 7 7 C 1.38845 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99933 * 200.72769 * 7 2 1 9 9 N 1.37490 * 119.99863 * 20.72360 * 7 2 1 10 10 C 1.36873 * 126.62665 * 37.43024 * 9 7 2 11 11 S 1.76198 * 125.90828 * 0.11373 * 10 9 7 12 12 N 1.31104 * 108.18719 * 180.37711 * 10 9 7 13 13 C 1.35185 * 109.63378 * 359.68814 * 12 10 9 14 14 C 1.33993 * 107.89750 * 0.15845 * 13 12 10 15 15 C 1.51036 * 127.53257 * 180.43460 * 14 13 12 16 16 S 1.81863 * 108.35771 * 342.52823 * 15 14 13 17 17 C 1.81891 * 101.55307 * 44.51722 * 16 15 14 18 18 C 1.50701 * 123.77763 * 179.86863 * 13 12 10 19 19 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 20 20 H 1.41000 * 100.00145 * 89.99735 * 11 10 9 21 21 H 1.08997 * 109.68573 * 102.24133 * 15 14 13 22 22 H 1.08997 * 109.68636 * 222.81310 * 15 14 13 23 23 H 1.08999 * 109.58680 * 175.66650 * 17 16 15 24 24 H 1.09001 * 109.70233 * 55.30621 * 17 16 15 25 25 H 1.08999 * 109.14985 * 281.03075 * 18 13 12 26 26 H 1.08995 * 109.15226 * 40.19868 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0084 -1.2024 -0.0005 8 1 3.0359 -1.2328 0.3305 9 7 1.3876 -2.3544 -0.4224 10 6 0.4926 -2.4699 -1.4515 11 16 -0.0720 -1.1571 -2.4822 12 7 0.1236 -3.7252 -1.5340 13 6 0.7596 -4.4489 -0.5857 14 6 1.5458 -3.6159 0.1097 15 6 2.4576 -3.9597 1.2636 16 16 1.9615 -5.5805 1.9226 17 6 1.7265 -6.5386 0.3944 18 6 0.5671 -5.9311 -0.3933 19 1 -0.4850 0.8400 0.0004 20 1 0.8946 -1.2174 -3.5070 21 1 3.4894 -4.0052 0.9153 22 1 2.3655 -3.2028 2.0425 23 1 1.4956 -7.5741 0.6442 24 1 2.6354 -6.5014 -0.2061 25 1 -0.3627 -6.1035 0.1487 26 1 0.5061 -6.4134 -1.3688 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259815603.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:53 Heat of formation + Delta-G solvation = 35.613387 kcal Electronic energy + Delta-G solvation = -13438.171393 eV Core-core repulsion = 11155.189427 eV Total energy + Delta-G solvation = -2282.981966 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.45406 -36.33237 -34.72811 -33.43592 -31.24164 -27.47491 -27.23024 -24.25864 -22.66555 -20.48394 -19.95186 -17.91841 -17.47935 -16.98467 -16.37377 -16.03668 -15.44333 -15.18249 -14.59790 -14.51429 -14.33276 -13.68246 -13.51614 -13.18083 -12.98211 -12.64925 -12.26158 -12.03518 -11.93681 -11.32790 -10.94785 -10.72536 -10.30677 -8.94041 -8.82815 -8.66516 -8.49944 -6.55773 0.62285 0.74592 1.07786 1.41573 1.45987 1.54461 1.54999 1.82623 2.16104 2.40997 2.85555 3.05714 3.87624 3.98277 4.10669 4.30365 4.36619 4.47816 4.72061 4.80170 5.04125 5.11073 5.16053 5.46775 6.02246 6.22798 6.67135 7.19431 7.42208 8.36913 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.030604 B = 0.009691 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.689890 B = 2888.589688 C = 3616.613876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.042 3.958 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.408 4.408 8 H 0.114 0.886 9 N -0.236 5.236 10 C 0.110 3.890 11 S 0.002 5.998 12 N -0.508 5.508 13 C -0.034 4.034 14 C -0.086 4.086 15 C 0.020 3.980 16 S -0.256 6.256 17 C -0.063 4.063 18 C -0.019 4.019 19 H 0.292 0.708 20 H 0.047 0.953 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.144 0.856 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -4.464 0.654 6.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.173 4.173 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.536 4.536 8 H 0.131 0.869 9 N 0.096 4.904 10 C -0.254 4.254 11 S 0.154 5.846 12 N -0.231 5.231 13 C -0.173 4.173 14 C -0.212 4.212 15 C -0.129 4.129 16 S -0.030 6.030 17 C -0.211 4.211 18 C -0.059 4.059 19 H 0.103 0.897 20 H 0.012 0.988 21 H 0.113 0.887 22 H 0.114 0.886 23 H 0.162 0.838 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.293 -4.026 0.784 5.260 hybrid contribution 1.638 0.830 -0.700 1.965 sum 4.931 -3.196 0.084 5.877 Atomic orbital electron populations 1.69904 1.08482 1.31094 1.35172 1.26326 0.95733 1.03240 0.91994 0.84894 0.78559 0.75292 0.79490 1.18779 1.19189 1.17936 1.20115 0.98421 0.84260 1.50811 0.86875 1.42215 1.25077 1.06231 1.16855 1.23960 1.06166 0.95642 0.99634 1.86034 1.38967 1.39886 1.19677 1.70596 1.26061 1.01735 1.24751 1.20728 1.00933 0.97275 0.98412 1.21154 1.09362 0.87452 1.03217 1.21442 0.98521 0.96815 0.96140 1.86485 1.91396 1.08694 1.16432 1.23394 1.01296 1.01820 0.94593 1.19779 0.98477 0.86589 1.01029 0.89730 0.98802 0.88740 0.88560 0.83834 0.89006 0.90548 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.12 10.79 21.64 0.23 -41.88 15 2 C 0.04 2.04 4.39 84.90 0.37 2.41 15 3 Si 1.00 36.96 29.60 68.60 2.03 38.99 15 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 15 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 7 C -0.41 -20.75 9.51 83.95 0.80 -19.95 15 8 H 0.11 5.42 7.91 -2.91 -0.02 5.40 15 9 N -0.24 -12.53 2.84 -336.42 -0.95 -13.49 15 10 C 0.11 5.95 7.65 179.49 1.37 7.33 15 11 S 0.00 0.08 22.72 -56.49 -1.28 -1.20 15 12 N -0.51 -26.70 11.29 -183.78 -2.08 -28.78 15 13 C -0.03 -1.60 6.74 41.08 0.28 -1.32 15 14 C -0.09 -4.09 6.67 40.76 0.27 -3.82 15 15 C 0.02 0.78 6.40 71.34 0.46 1.23 15 16 S -0.26 -8.34 22.30 -56.49 -1.26 -9.60 15 17 C -0.06 -1.69 6.49 71.90 0.47 -1.23 15 18 C -0.02 -0.64 6.05 29.77 0.18 -0.46 15 19 H 0.29 13.77 8.31 -92.71 -0.77 13.00 15 20 H 0.05 2.08 9.55 73.80 0.70 2.78 15 21 H 0.09 3.33 8.14 -2.39 -0.02 3.31 15 22 H 0.10 3.89 8.14 -2.39 -0.02 3.87 15 23 H 0.14 2.79 8.14 -2.39 -0.02 2.77 15 24 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 15 26 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 Total: -1.00 -61.74 249.39 2.80 -58.94 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.92 Total: 12.83 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.20 Total: -15.81 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -2.80 Total: -84.15 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -2.54 Total: -10.80 kcal Total: -61.74 2.80 -58.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259815603.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.554 kcal (2) G-P(sol) polarization free energy of solvation -61.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds