Wall clock time and date at job start Mon Mar 30 2020 05:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.33305 * 126.09007 * 2 1 4 4 C 1.36105 * 111.37435 * 180.02562 * 3 2 1 5 5 C 1.32680 * 109.09370 * 0.03727 * 4 3 2 6 6 C 1.38561 * 126.09129 * 180.02562 * 2 1 3 7 7 C 1.41387 * 127.37963 * 359.97438 * 6 2 1 8 8 H 1.07998 * 119.99989 * 23.33353 * 7 6 2 9 9 C 1.39699 * 119.99846 * 203.33115 * 7 6 2 10 10 N 1.31024 * 119.99931 * 18.90404 * 9 7 6 11 11 Si 1.86794 * 119.99903 * 198.90346 * 9 7 6 12 12 H 1.48508 * 109.47406 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47337 * 120.00267 * 11 9 7 14 14 H 1.48503 * 109.47088 * 240.00229 * 11 9 7 15 15 C 1.52087 * 116.58209 * 179.73733 * 5 4 3 16 16 S 1.83141 * 103.41124 * 342.78718 * 15 5 4 17 17 O 1.42098 * 109.76929 * 270.34769 * 16 15 5 18 18 O 1.42100 * 110.03639 * 135.78213 * 16 15 5 19 19 C 1.52561 * 135.04712 * 180.02562 * 4 3 2 20 20 H 1.08998 * 109.47456 * 264.89414 * 1 2 3 21 21 H 1.09003 * 109.46942 * 24.89562 * 1 2 3 22 22 H 1.09008 * 109.46982 * 144.89180 * 1 2 3 23 23 H 0.96999 * 119.99653 * 177.71732 * 10 9 7 24 24 H 1.08990 * 110.64366 * 101.27328 * 15 5 4 25 25 H 1.08997 * 110.63870 * 224.33997 * 15 5 4 26 26 H 1.08997 * 110.61207 * 316.10915 * 19 4 3 27 27 H 1.08998 * 110.61510 * 79.09626 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2922 1.0772 0.0000 4 6 3.6086 0.7315 -0.0006 5 6 3.7099 -0.5914 -0.0018 6 6 2.3232 -1.1197 -0.0005 7 6 1.9209 -2.4751 -0.0006 8 1 0.9439 -2.7484 -0.3708 9 6 2.7874 -3.4609 0.4781 10 7 3.7913 -3.1307 1.2526 11 14 2.5147 -5.2495 0.0139 12 1 1.3220 -5.3568 -0.8645 13 1 3.7076 -5.7612 -0.7074 14 1 2.2979 -6.0527 1.2440 15 6 5.1180 -1.1662 -0.0088 16 16 6.1518 0.2491 -0.5401 17 8 6.2608 0.2595 -1.9569 18 8 7.3168 0.3319 0.2692 19 6 4.9266 1.4998 -0.0004 20 1 -0.3634 -0.0915 1.0235 21 1 -0.3633 0.9322 -0.4326 22 1 -0.3633 -0.8408 -0.5911 23 1 4.3733 -3.8186 1.6118 24 1 5.4031 -1.4965 0.9899 25 1 5.1946 -1.9864 -0.7225 26 1 4.8877 2.3287 -0.7071 27 1 5.1613 1.8590 1.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259848890.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:12 Heat of formation + Delta-G solvation = -51.825405 kcal Electronic energy + Delta-G solvation = -15611.735842 eV Core-core repulsion = 12849.916623 eV Total energy + Delta-G solvation = -2761.819219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.75622 -36.68700 -35.67458 -34.42289 -33.50563 -31.15874 -28.79894 -27.98364 -25.34426 -23.27872 -20.15973 -18.63612 -18.29399 -17.04728 -15.94764 -15.72262 -15.43508 -14.93109 -14.66936 -14.60166 -13.25022 -13.01677 -12.66935 -12.48337 -12.36081 -11.89361 -11.76740 -11.69713 -11.59606 -11.35897 -11.28211 -10.90868 -10.77739 -10.23655 -10.14779 -9.68181 -9.26373 -8.00862 -7.22134 -6.76683 -4.34014 0.50117 2.67179 2.79371 2.98029 3.07821 3.12498 3.69883 3.79293 3.94704 4.11901 4.48292 5.09013 5.31494 5.38843 5.56384 5.72154 5.99449 6.13911 6.41394 6.45894 6.52970 6.79345 6.91273 7.17114 7.40539 7.57535 8.18736 8.56020 8.71904 8.91526 10.23331 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.011265 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.173169 B = 2484.965648 C = 3460.501405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.191 4.191 3 O -0.183 6.183 4 C -0.051 4.051 5 C -0.154 4.154 6 C 0.070 3.930 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.806 5.806 11 Si 0.905 3.095 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.276 1.276 15 C -0.451 4.451 16 S 2.375 3.625 17 O -0.940 6.940 18 O -0.944 6.944 19 C -0.494 4.494 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.277 0.723 24 H 0.152 0.848 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 2.804 -0.682 3.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.240 4.240 3 O -0.084 6.084 4 C -0.101 4.101 5 C -0.158 4.158 6 C 0.066 3.934 7 C -0.484 4.484 8 H 0.099 0.901 9 C -0.137 4.137 10 N -0.434 5.434 11 Si 0.730 3.270 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.202 1.202 15 C -0.583 4.583 16 S 2.560 3.440 17 O -0.937 6.937 18 O -0.941 6.941 19 C -0.620 4.620 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.170 0.830 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.012 3.107 -1.027 3.841 hybrid contribution -0.755 -0.993 0.351 1.296 sum 1.257 2.113 -0.677 2.550 Atomic orbital electron populations 1.19596 0.86608 1.00824 1.00892 1.22021 0.91978 0.82976 1.26990 1.83452 1.13118 1.35695 1.76182 1.20674 0.84010 0.92094 1.13325 1.20751 0.94003 0.91232 1.09836 1.18550 0.86514 0.93098 0.95229 1.18733 1.01793 0.89443 1.38473 0.90052 1.25717 0.93845 1.01158 0.93012 1.69873 1.14480 1.35428 1.23649 0.86313 0.79495 0.81970 0.79231 1.18536 1.19848 1.20164 1.28722 1.03887 1.13269 1.12413 1.09658 0.77481 0.81092 0.75818 1.93586 1.87033 1.85223 1.27842 1.93587 1.44598 1.85328 1.70595 1.29265 1.05550 1.15232 1.12000 0.92932 0.93454 0.91250 0.91211 0.83048 0.85573 0.85122 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.43 10.22 36.00 0.37 -0.06 15 2 C -0.19 -4.57 7.47 -34.19 -0.26 -4.83 15 3 O -0.18 -4.32 10.55 2.97 0.03 -4.29 15 4 C -0.05 -1.11 7.80 -35.27 -0.27 -1.38 15 5 C -0.15 -3.63 6.00 -101.65 -0.61 -4.24 15 6 C 0.07 1.79 5.89 -104.40 -0.61 1.18 15 7 C -0.45 -11.56 9.09 -37.84 -0.34 -11.91 15 8 H 0.08 1.99 7.62 -52.49 -0.40 1.59 15 9 C 0.08 1.89 5.33 -17.35 -0.09 1.80 15 10 N -0.81 -19.57 9.83 55.54 0.55 -19.02 15 11 Si 0.90 18.27 29.60 -169.99 -5.03 13.24 15 12 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 14 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 15 C -0.45 -9.04 5.61 36.69 0.21 -8.83 15 16 S 2.37 40.76 6.29 -107.50 -0.68 40.08 15 17 O -0.94 -18.60 18.16 -57.66 -1.05 -19.65 15 18 O -0.94 -17.50 18.17 -57.66 -1.05 -18.55 15 19 C -0.49 -8.10 7.38 36.93 0.27 -7.83 15 20 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.07 1.26 7.82 -51.92 -0.41 0.85 15 23 H 0.28 6.14 8.30 -40.82 -0.34 5.80 15 24 H 0.15 3.01 7.14 -51.93 -0.37 2.64 15 25 H 0.13 2.51 8.14 -51.93 -0.42 2.09 15 26 H 0.13 1.82 8.14 -51.93 -0.42 1.40 15 27 H 0.14 1.93 8.14 -51.93 -0.42 1.51 15 LS Contribution 250.29 15.07 3.77 3.77 Total: -1.00 -31.55 250.29 -7.22 -38.78 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -2.42 Total: 1.74 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: -1.35 Total: -36.10 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.55 Total: -19.02 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -2.06 Total: -42.49 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 40.76 SS G_CDS: -0.68 Total: 40.08 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.55 -7.22 -38.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848890.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.048 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds