Wall clock time and date at job start Mon Mar 30 2020 05:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.33305 * 126.09007 * 2 1 4 4 C 1.36105 * 111.37435 * 180.02562 * 3 2 1 5 5 C 1.32680 * 109.09370 * 0.03727 * 4 3 2 6 6 C 1.38561 * 126.09129 * 180.02562 * 2 1 3 7 7 C 1.41387 * 127.37963 * 359.97438 * 6 2 1 8 8 H 1.07998 * 119.99989 * 23.33353 * 7 6 2 9 9 C 1.39699 * 119.99846 * 203.33115 * 7 6 2 10 10 N 1.31024 * 119.99931 * 18.90404 * 9 7 6 11 11 Si 1.86794 * 119.99903 * 198.90346 * 9 7 6 12 12 H 1.48508 * 109.47406 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47337 * 120.00267 * 11 9 7 14 14 H 1.48503 * 109.47088 * 240.00229 * 11 9 7 15 15 C 1.52087 * 116.58209 * 179.73733 * 5 4 3 16 16 S 1.83141 * 103.41124 * 342.78718 * 15 5 4 17 17 O 1.42098 * 109.76929 * 270.34769 * 16 15 5 18 18 O 1.42100 * 110.03639 * 135.78213 * 16 15 5 19 19 C 1.52561 * 135.04712 * 180.02562 * 4 3 2 20 20 H 1.08998 * 109.47456 * 264.89414 * 1 2 3 21 21 H 1.09003 * 109.46942 * 24.89562 * 1 2 3 22 22 H 1.09008 * 109.46982 * 144.89180 * 1 2 3 23 23 H 0.96999 * 119.99653 * 177.71732 * 10 9 7 24 24 H 1.08990 * 110.64366 * 101.27328 * 15 5 4 25 25 H 1.08997 * 110.63870 * 224.33997 * 15 5 4 26 26 H 1.08997 * 110.61207 * 316.10915 * 19 4 3 27 27 H 1.08998 * 110.61510 * 79.09626 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2922 1.0772 0.0000 4 6 3.6086 0.7315 -0.0006 5 6 3.7099 -0.5914 -0.0018 6 6 2.3232 -1.1197 -0.0005 7 6 1.9209 -2.4751 -0.0006 8 1 0.9439 -2.7484 -0.3708 9 6 2.7874 -3.4609 0.4781 10 7 3.7913 -3.1307 1.2526 11 14 2.5147 -5.2495 0.0139 12 1 1.3220 -5.3568 -0.8645 13 1 3.7076 -5.7612 -0.7074 14 1 2.2979 -6.0527 1.2440 15 6 5.1180 -1.1662 -0.0088 16 16 6.1518 0.2491 -0.5401 17 8 6.2608 0.2595 -1.9569 18 8 7.3168 0.3319 0.2692 19 6 4.9266 1.4998 -0.0004 20 1 -0.3634 -0.0915 1.0235 21 1 -0.3633 0.9322 -0.4326 22 1 -0.3633 -0.8408 -0.5911 23 1 4.3733 -3.8186 1.6118 24 1 5.4031 -1.4965 0.9899 25 1 5.1946 -1.9864 -0.7225 26 1 4.8877 2.3287 -0.7071 27 1 5.1613 1.8590 1.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259848890.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:12 Heat of formation + Delta-G solvation = -74.285421 kcal Electronic energy + Delta-G solvation = -15612.709781 eV Core-core repulsion = 12849.916623 eV Total energy + Delta-G solvation = -2762.793158 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.49909 -38.20645 -37.20426 -36.15596 -35.18818 -32.90025 -30.28017 -29.63818 -27.10408 -24.92354 -21.94285 -20.17394 -19.87275 -18.80421 -17.46453 -17.27011 -17.05564 -16.55217 -16.33717 -16.28800 -14.85186 -14.41032 -14.24505 -14.16975 -14.00264 -13.42325 -13.28614 -13.22861 -13.20257 -12.98692 -12.94145 -12.47875 -12.45277 -11.86190 -11.77584 -11.35829 -11.04012 -9.78731 -8.97837 -8.55326 -6.20980 -0.95380 1.04195 1.22075 1.37028 1.41894 1.53659 2.01368 2.15193 2.26277 2.64713 3.06760 3.25168 3.80276 3.90109 4.13094 4.38008 4.44037 4.59067 4.83490 4.93607 4.97402 5.14533 5.19855 5.38821 5.74182 5.83800 6.32253 6.74044 6.89146 7.07717 8.46150 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.011265 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.173169 B = 2484.965648 C = 3460.501405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 C -0.209 4.209 3 O -0.193 6.193 4 C -0.055 4.055 5 C -0.186 4.186 6 C 0.022 3.978 7 C -0.488 4.488 8 H 0.077 0.923 9 C 0.041 3.959 10 N -0.827 5.827 11 Si 0.970 3.030 12 H -0.262 1.262 13 H -0.269 1.269 14 H -0.269 1.269 15 C -0.465 4.465 16 S 2.431 3.569 17 O -0.960 6.960 18 O -0.949 6.949 19 C -0.479 4.479 20 H 0.061 0.939 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.284 0.716 24 H 0.148 0.852 25 H 0.116 0.884 26 H 0.166 0.834 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 3.526 -0.712 3.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.257 4.257 3 O -0.095 6.095 4 C -0.105 4.105 5 C -0.190 4.190 6 C 0.019 3.981 7 C -0.519 4.519 8 H 0.095 0.905 9 C -0.173 4.173 10 N -0.455 5.455 11 Si 0.793 3.207 12 H -0.186 1.186 13 H -0.194 1.194 14 H -0.194 1.194 15 C -0.595 4.595 16 S 2.615 3.385 17 O -0.958 6.958 18 O -0.946 6.946 19 C -0.607 4.607 20 H 0.080 0.920 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.166 0.834 25 H 0.135 0.865 26 H 0.184 0.816 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.591 3.810 -1.052 4.726 hybrid contribution -0.917 -1.123 0.384 1.500 sum 1.674 2.687 -0.668 3.235 Atomic orbital electron populations 1.19704 0.84017 1.02250 1.01757 1.22798 0.93793 0.82797 1.26295 1.83444 1.13980 1.35751 1.76281 1.21506 0.84746 0.92757 1.11531 1.21147 0.94689 0.92484 1.10671 1.19112 0.88481 0.93941 0.96592 1.18938 1.02406 0.90360 1.40161 0.90490 1.26434 0.93558 1.04718 0.92610 1.69924 1.14922 1.36829 1.23835 0.85326 0.79298 0.77144 0.78976 1.18567 1.19379 1.19409 1.28826 1.03223 1.15181 1.12249 1.08029 0.76387 0.79602 0.74506 1.93558 1.87330 1.85405 1.29470 1.93578 1.45018 1.85229 1.70779 1.29351 1.01217 1.15059 1.15053 0.92038 0.91054 0.90909 0.90535 0.83450 0.86522 0.81636 0.81000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.79 10.22 71.23 0.73 -0.06 15 2 C -0.21 -10.04 7.47 25.76 0.19 -9.85 15 3 O -0.19 -8.99 10.55 -12.29 -0.13 -9.12 15 4 C -0.06 -2.35 7.80 25.12 0.20 -2.16 15 5 C -0.19 -8.81 6.00 -17.88 -0.11 -8.92 15 6 C 0.02 1.17 5.89 -19.72 -0.12 1.05 15 7 C -0.49 -25.61 9.09 23.40 0.21 -25.40 15 8 H 0.08 3.91 7.62 -2.91 -0.02 3.89 15 9 C 0.04 1.98 5.33 85.17 0.45 2.44 15 10 N -0.83 -40.77 9.83 21.79 0.21 -40.56 15 11 Si 0.97 37.82 29.60 68.60 2.03 39.85 15 12 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 13 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 14 H -0.27 -10.09 7.11 99.48 0.71 -9.39 15 15 C -0.47 -18.69 5.61 71.68 0.40 -18.28 15 16 S 2.43 78.33 6.29 -56.49 -0.36 77.97 15 17 O -0.96 -36.18 18.16 -127.54 -2.32 -38.49 15 18 O -0.95 -32.66 18.17 -127.54 -2.32 -34.98 15 19 C -0.48 -14.08 7.38 71.84 0.53 -13.55 15 20 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.07 2.30 8.14 -2.39 -0.02 2.28 15 22 H 0.07 2.66 7.82 -2.38 -0.02 2.64 15 23 H 0.28 12.69 8.30 -92.71 -0.77 11.92 15 24 H 0.15 5.93 7.14 -2.39 -0.02 5.92 15 25 H 0.12 4.78 8.14 -2.39 -0.02 4.76 15 26 H 0.17 3.83 8.14 -2.39 -0.02 3.81 15 27 H 0.17 4.02 8.14 -2.39 -0.02 4.00 15 Total: -1.00 -67.73 250.29 0.81 -66.92 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.20 Total: 13.13 kcal Atomic # 6 Polarization: -77.22 SS G_CDS: 2.49 Total: -74.73 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.21 Total: -40.56 kcal Atomic # 8 Polarization: -77.82 SS G_CDS: -4.76 Total: -82.59 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 78.33 SS G_CDS: -0.36 Total: 77.97 kcal Total: -67.73 0.81 -66.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848890.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.365 kcal (2) G-P(sol) polarization free energy of solvation -67.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds