Wall clock time and date at job start Mon Mar 30 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99974 * 2 1 4 4 H 1.48506 * 109.47174 * 240.00470 * 3 2 1 5 5 H 1.48498 * 109.47472 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47089 * 120.00604 * 3 2 1 7 7 C 1.37874 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00157 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00209 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47367 * 179.97438 * 9 7 2 11 11 C 1.36468 * 126.65667 * 270.02651 * 10 9 7 12 12 S 1.76200 * 125.75584 * 359.77617 * 11 10 9 13 13 N 1.30644 * 108.49801 * 179.75244 * 11 10 9 14 14 C 1.36467 * 109.92489 * 359.90465 * 13 11 10 15 15 C 1.34705 * 106.66844 * 0.38373 * 14 13 11 16 16 S 1.77255 * 108.81629 * 179.26797 * 15 14 13 17 17 C 1.83410 * 96.39766 * 345.30223 * 16 15 14 18 18 C 1.50989 * 137.10622 * 180.78773 * 14 13 11 19 19 H 0.96999 * 119.99809 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47056 * 60.00243 * 9 7 2 21 21 H 1.09004 * 109.47149 * 300.00401 * 9 7 2 22 22 H 1.34504 * 102.99822 * 269.99965 * 12 11 10 23 23 H 1.08999 * 111.18122 * 266.20622 * 17 16 15 24 24 H 1.09008 * 111.21830 * 141.91573 * 17 16 15 25 25 H 1.09001 * 109.34596 * 320.22283 * 18 14 13 26 26 H 1.09007 * 109.34686 * 79.90859 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.7319 -4.2312 -1.0972 12 16 2.3810 -3.8289 -2.7764 13 7 3.5428 -5.1716 -0.6911 14 6 3.5751 -5.2008 0.6728 15 6 2.7368 -4.2367 1.0999 16 16 2.7190 -4.2387 2.8724 17 6 3.5201 -5.8750 3.0831 18 6 4.2816 -5.9941 1.7458 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 1.3273 -4.6146 -3.0619 23 1 2.7779 -6.6667 3.1854 24 1 4.2078 -5.8717 3.9289 25 1 4.3282 -7.0418 1.4487 26 1 5.2936 -5.6093 1.8721 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865405.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:49 Heat of formation + Delta-G solvation = 68.470391 kcal Electronic energy + Delta-G solvation = -13033.596311 eV Core-core repulsion = 10752.039132 eV Total energy + Delta-G solvation = -2281.557179 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.28281 -34.95993 -33.48838 -31.90005 -28.49564 -27.21220 -24.00010 -23.05162 -21.56302 -19.74632 -17.41374 -16.87958 -16.62493 -15.38594 -15.15645 -14.66052 -14.20022 -13.85555 -13.72530 -12.68815 -12.44186 -12.11088 -11.87468 -11.69884 -11.13920 -10.88429 -10.79744 -10.36434 -10.14889 -10.01155 -9.46576 -9.23724 -8.67948 -8.48183 -7.80468 -6.95630 -6.31349 -4.39015 1.43291 1.68710 2.12397 2.55109 2.84102 3.23777 3.26733 3.30895 3.48348 3.78799 4.28003 4.48536 4.89339 5.04454 5.06516 5.52267 5.62004 5.86957 5.89402 6.11525 6.77159 6.81788 7.18408 7.47474 7.67856 7.76972 8.20375 8.64347 9.27921 10.77559 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.009490 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.309718 B = 2949.623340 C = 3842.049784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.228 3.772 10 N -0.372 5.372 11 C 0.187 3.813 12 S 0.017 5.983 13 N -0.438 5.438 14 C -0.049 4.049 15 C 0.007 3.993 16 S -0.070 6.070 17 C -0.093 4.093 18 C -0.034 4.034 19 H 0.269 0.731 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -9.293 3.043 10.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.110 3.890 10 N -0.053 5.053 11 C -0.186 4.186 12 S 0.170 5.830 13 N -0.160 5.160 14 C -0.188 4.188 15 C -0.229 4.229 16 S 0.163 5.837 17 C -0.242 4.242 18 C -0.073 4.073 19 H 0.079 0.921 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.021 0.979 23 H 0.115 0.885 24 H 0.136 0.864 25 H 0.104 0.896 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.124 -8.328 2.461 9.614 hybrid contribution -0.388 -0.121 0.323 0.519 sum 3.736 -8.450 2.784 9.649 Atomic orbital electron populations 1.69906 1.06111 1.27950 1.48754 1.24888 0.94959 0.99483 0.94022 0.86381 0.79484 0.81565 0.79160 1.19609 1.20884 1.19883 1.21094 0.93598 0.89087 1.53617 0.91625 1.20029 0.87008 0.81659 1.00310 1.46190 1.31670 1.25364 1.02113 1.23900 1.03303 0.98406 0.92978 1.85810 1.41616 1.55325 1.00256 1.70523 1.17581 1.18599 1.09279 1.21822 1.03422 1.01984 0.91612 1.22732 1.04729 1.01218 0.94175 1.85942 1.78815 1.23616 0.95355 1.24486 1.02081 0.97275 1.00334 1.19978 0.98507 1.00336 0.88527 0.92091 0.92193 0.93112 0.97918 0.88476 0.86380 0.89620 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 13.29 55.43 0.74 -24.13 15 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 15 3 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 7 C -0.54 -14.67 9.39 -34.44 -0.32 -15.00 15 8 H 0.07 1.86 7.81 -52.49 -0.41 1.45 15 9 C 0.23 5.81 5.75 -5.19 -0.03 5.78 15 10 N -0.37 -8.73 2.79 -116.97 -0.33 -9.05 15 11 C 0.19 4.14 8.23 -88.94 -0.73 3.40 15 12 S 0.02 0.32 25.60 -107.50 -2.75 -2.43 15 13 N -0.44 -9.45 11.30 -9.11 -0.10 -9.56 15 14 C -0.05 -0.95 7.71 -81.64 -0.63 -1.58 15 15 C 0.01 0.15 7.98 -16.30 -0.13 0.02 15 16 S -0.07 -1.21 23.10 -107.50 -2.48 -3.70 15 17 C -0.09 -1.08 7.65 37.86 0.29 -0.79 15 18 C -0.03 -0.47 6.36 -27.04 -0.17 -0.64 15 19 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 20 H 0.06 1.55 7.75 -51.93 -0.40 1.15 15 21 H 0.05 1.36 8.14 -51.93 -0.42 0.93 15 22 H 0.06 0.95 9.07 97.61 0.89 1.83 15 23 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.12 1.00 8.14 -51.92 -0.42 0.58 15 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 LS Contribution 259.12 15.07 3.90 3.90 Total: -1.00 -30.07 259.12 -9.04 -39.11 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -1.18 Total: -3.20 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.82 Total: -6.99 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.31 Total: -42.75 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -5.24 Total: -6.13 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.07 -9.04 -39.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865405.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.584 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds