Wall clock time and date at job start Mon Mar 30 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99974 * 2 1 4 4 H 1.48506 * 109.47174 * 240.00470 * 3 2 1 5 5 H 1.48498 * 109.47472 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47089 * 120.00604 * 3 2 1 7 7 C 1.37874 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00157 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00209 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47367 * 179.97438 * 9 7 2 11 11 C 1.36468 * 126.65667 * 270.02651 * 10 9 7 12 12 S 1.76200 * 125.75584 * 359.77617 * 11 10 9 13 13 N 1.30644 * 108.49801 * 179.75244 * 11 10 9 14 14 C 1.36467 * 109.92489 * 359.90465 * 13 11 10 15 15 C 1.34705 * 106.66844 * 0.38373 * 14 13 11 16 16 S 1.77255 * 108.81629 * 179.26797 * 15 14 13 17 17 C 1.83410 * 96.39766 * 345.30223 * 16 15 14 18 18 C 1.50989 * 137.10622 * 180.78773 * 14 13 11 19 19 H 0.96999 * 119.99809 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47056 * 60.00243 * 9 7 2 21 21 H 1.09004 * 109.47149 * 300.00401 * 9 7 2 22 22 H 1.34504 * 102.99822 * 269.99965 * 12 11 10 23 23 H 1.08999 * 111.18122 * 266.20622 * 17 16 15 24 24 H 1.09008 * 111.21830 * 141.91573 * 17 16 15 25 25 H 1.09001 * 109.34596 * 320.22283 * 18 14 13 26 26 H 1.09007 * 109.34686 * 79.90859 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.7319 -4.2312 -1.0972 12 16 2.3810 -3.8289 -2.7764 13 7 3.5428 -5.1716 -0.6911 14 6 3.5751 -5.2008 0.6728 15 6 2.7368 -4.2367 1.0999 16 16 2.7190 -4.2387 2.8724 17 6 3.5201 -5.8750 3.0831 18 6 4.2816 -5.9941 1.7458 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 1.3273 -4.6146 -3.0619 23 1 2.7779 -6.6667 3.1854 24 1 4.2078 -5.8717 3.9289 25 1 4.3282 -7.0418 1.4487 26 1 5.2936 -5.6093 1.8721 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865405.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:49 Heat of formation + Delta-G solvation = 50.327883 kcal Electronic energy + Delta-G solvation = -13034.383029 eV Core-core repulsion = 10752.039132 eV Total energy + Delta-G solvation = -2282.343897 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.88160 -36.52197 -35.16572 -33.70599 -30.05299 -29.01493 -25.61295 -24.57477 -23.19207 -21.24505 -19.17707 -18.62044 -18.39932 -16.81896 -16.68556 -16.35215 -15.65116 -15.36455 -15.18834 -14.34202 -13.85200 -13.76029 -13.60370 -13.00719 -12.75166 -12.74009 -12.34092 -12.32119 -11.90285 -11.49456 -11.02014 -10.79776 -10.75066 -10.13910 -9.32869 -8.39839 -8.35125 -6.55310 -0.00375 0.25237 0.53433 1.28058 1.37678 1.39790 1.40565 1.48649 1.93416 2.07396 2.35070 2.94072 3.19136 3.80029 4.10140 4.21973 4.31533 4.68575 4.71716 4.77609 4.91593 5.23952 5.41852 5.49910 5.70078 5.80851 6.49906 6.59931 7.15765 8.69713 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.009490 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.309718 B = 2949.623340 C = 3842.049784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.029 3.971 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.050 0.950 9 C 0.248 3.752 10 N -0.393 5.393 11 C 0.165 3.835 12 S 0.016 5.984 13 N -0.451 5.451 14 C -0.048 4.048 15 C -0.028 4.028 16 S -0.112 6.112 17 C -0.063 4.063 18 C -0.035 4.035 19 H 0.275 0.725 20 H 0.048 0.952 21 H 0.028 0.972 22 H 0.078 0.922 23 H 0.119 0.881 24 H 0.161 0.839 25 H 0.113 0.887 26 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 -10.134 4.015 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.068 0.932 9 C 0.128 3.872 10 N -0.076 5.076 11 C -0.206 4.206 12 S 0.169 5.831 13 N -0.173 5.173 14 C -0.188 4.188 15 C -0.261 4.261 16 S 0.120 5.880 17 C -0.211 4.211 18 C -0.074 4.074 19 H 0.084 0.916 20 H 0.066 0.934 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.138 0.862 24 H 0.179 0.821 25 H 0.131 0.869 26 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.407 -9.197 3.446 11.212 hybrid contribution -0.772 0.018 0.056 0.774 sum 4.635 -9.180 3.502 10.863 Atomic orbital electron populations 1.69986 1.07343 1.29072 1.48962 1.25687 0.95771 1.02615 0.93236 0.85430 0.78441 0.77670 0.79206 1.19076 1.19590 1.19639 1.21188 0.92926 0.90446 1.54311 0.93197 1.19521 0.87036 0.82126 0.98487 1.46085 1.32341 1.25588 1.03579 1.24388 1.03750 0.98727 0.93783 1.85642 1.42569 1.56157 0.98736 1.70544 1.17589 1.18543 1.10629 1.22909 1.02603 1.01663 0.91579 1.23470 1.05347 1.01695 0.95631 1.85960 1.79933 1.28999 0.93086 1.24778 1.02394 0.93337 1.00594 1.20243 0.98706 1.00991 0.87444 0.91618 0.93365 0.95388 0.95833 0.86219 0.82083 0.86880 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.80 13.29 21.45 0.28 -51.51 15 2 C 0.03 1.56 5.46 84.65 0.46 2.03 15 3 Si 0.97 43.14 29.54 68.60 2.03 45.17 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 7 C -0.55 -30.95 9.39 25.60 0.24 -30.71 15 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 15 9 C 0.25 13.14 5.75 85.63 0.49 13.63 15 10 N -0.39 -18.93 2.79 -523.97 -1.46 -20.39 15 11 C 0.17 7.41 8.23 179.76 1.48 8.89 15 12 S 0.02 0.62 25.60 -56.49 -1.45 -0.82 15 13 N -0.45 -19.30 11.30 -182.75 -2.07 -21.37 15 14 C -0.05 -1.82 7.71 41.12 0.32 -1.50 15 15 C -0.03 -1.22 7.98 83.01 0.66 -0.55 15 16 S -0.11 -3.79 23.10 -56.49 -1.30 -5.09 15 17 C -0.06 -1.20 7.65 72.44 0.55 -0.65 15 18 C -0.03 -0.83 6.36 30.40 0.19 -0.64 15 19 H 0.27 14.52 8.31 -92.71 -0.77 13.75 15 20 H 0.05 2.61 7.75 -2.39 -0.02 2.59 15 21 H 0.03 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.08 2.58 9.07 73.35 0.67 3.25 15 23 H 0.12 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.16 1.80 8.14 -2.38 -0.02 1.78 15 25 H 0.11 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.11 2.24 8.14 -2.38 -0.02 2.22 15 Total: -1.00 -66.66 259.12 2.31 -64.35 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: 1.88 Total: -0.83 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.40 Total: -9.50 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -3.24 Total: -93.27 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.75 Total: -5.91 kcal Total: -66.66 2.31 -64.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865405.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.677 kcal (2) G-P(sol) polarization free energy of solvation -66.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds