Wall clock time and date at job start Mon Mar 30 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48494 * 109.47277 * 270.00247 * 3 2 1 5 5 H 1.48508 * 109.46993 * 30.00096 * 3 2 1 6 6 H 1.48493 * 109.47160 * 149.99900 * 3 2 1 7 7 C 1.38802 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00283 * 179.97438 * 7 2 1 9 9 N 1.36906 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.38862 * 120.00043 * 180.02562 * 9 7 2 11 11 C 1.39229 * 119.69938 * 359.97438 * 10 9 7 12 12 C 1.38305 * 119.09777 * 179.97438 * 11 10 9 13 13 C 1.38955 * 118.50001 * 0.02562 * 12 11 10 14 14 Br 1.89100 * 120.33980 * 179.97438 * 13 12 11 15 15 C 1.38211 * 119.31836 * 0.02562 * 13 12 11 16 16 N 1.31892 * 120.85288 * 0.02562 * 15 13 12 17 17 H 0.96992 * 120.00402 * 359.97438 * 1 2 3 18 18 H 0.96998 * 120.00119 * 359.97438 * 9 7 2 19 19 H 1.07994 * 120.44910 * 0.25362 * 11 10 9 20 20 H 1.08001 * 120.74349 * 180.02562 * 12 11 10 21 21 H 1.08008 * 119.57363 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0466 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4404 0.7000 7 6 2.0098 -1.2020 -0.0005 8 1 3.0898 -1.2020 -0.0010 9 7 1.3254 -2.3877 -0.0016 10 6 2.0197 -3.5902 -0.0016 11 6 3.4120 -3.5829 -0.0011 12 6 4.0910 -4.7878 -0.0005 13 6 3.3526 -5.9649 -0.0011 14 35 4.2276 -7.6413 -0.0011 15 6 1.9722 -5.8979 -0.0027 16 7 1.3515 -4.7341 -0.0042 17 1 -0.4850 0.8399 0.0004 18 1 0.3554 -2.3878 -0.0016 19 1 3.9543 -2.6490 0.0035 20 1 5.1707 -4.8130 0.0003 21 1 1.3942 -6.8103 -0.0027 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259928003.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:42 Heat of formation + Delta-G solvation = 19.643701 kcal Electronic energy + Delta-G solvation = -9871.665997 eV Core-core repulsion = 7792.934175 eV Total energy + Delta-G solvation = -2078.731821 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.81111 -37.21859 -34.11758 -33.24664 -31.82533 -29.25499 -26.71395 -24.39808 -22.90253 -19.81371 -18.69595 -17.26349 -16.52184 -16.00782 -15.34189 -15.18524 -15.03487 -13.77983 -13.60826 -13.23823 -12.83187 -12.53299 -12.19704 -12.09042 -11.55746 -11.14891 -10.59759 -10.46214 -10.15672 -8.79253 -8.59126 -5.88339 0.45704 0.64226 1.00148 1.42957 1.48615 1.56390 2.20689 2.78692 3.04094 3.32368 3.87934 4.14630 4.44946 4.59998 4.96996 5.18555 5.19562 5.40120 5.65358 5.97418 6.59849 6.99955 7.29997 7.70140 8.58617 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.085575 B = 0.005630 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.121621 B = 4971.843032 C = 5289.123216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.008 2.992 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.324 4.324 8 H 0.117 0.883 9 N -0.545 5.545 10 C 0.350 3.650 11 C -0.265 4.265 12 C 0.003 3.997 13 C -0.267 4.267 14 Br -0.053 7.053 15 C 0.188 3.812 16 N -0.593 5.593 17 H 0.280 0.720 18 H 0.393 0.607 19 H 0.133 0.867 20 H 0.152 0.848 21 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.852 -9.881 0.025 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.224 4.224 3 Si 0.830 3.170 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.454 4.454 8 H 0.134 0.866 9 N -0.149 5.149 10 C 0.108 3.892 11 C -0.293 4.293 12 C -0.023 4.023 13 C -0.354 4.354 14 Br 0.030 6.970 15 C 0.023 3.977 16 N -0.314 5.314 17 H 0.090 0.910 18 H 0.227 0.773 19 H 0.151 0.849 20 H 0.170 0.830 21 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.136 -9.904 0.028 12.817 hybrid contribution 0.149 1.145 -0.011 1.155 sum 8.285 -8.759 0.017 12.056 Atomic orbital electron populations 1.69809 1.07710 1.29881 1.48279 1.26382 0.96570 1.03448 0.96020 0.84689 0.78094 0.75445 0.78787 1.19529 1.20496 1.17838 1.20165 0.93780 0.82479 1.48973 0.86580 1.40985 1.08374 1.01962 1.63622 1.18748 0.89736 0.86000 0.94755 1.21267 0.92698 0.99312 1.16050 1.21258 1.00308 0.89827 0.90926 1.22046 0.95500 0.91881 1.26004 1.96469 1.78624 1.23330 1.98535 1.22512 0.90614 0.94688 0.89920 1.67214 1.40647 0.97828 1.25747 0.91050 0.77281 0.84943 0.83034 0.81353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.13 13.05 21.65 0.28 -48.85 14 2 C -0.02 -1.16 5.50 84.87 0.47 -0.69 14 3 Si 1.01 38.79 29.55 68.60 2.03 40.81 14 4 H -0.27 -10.13 7.11 99.48 0.71 -9.42 14 5 H -0.28 -10.67 7.11 99.48 0.71 -9.96 14 6 H -0.25 -9.20 7.11 99.48 0.71 -8.49 14 7 C -0.32 -16.37 9.54 84.04 0.80 -15.57 14 8 H 0.12 5.44 5.65 -2.91 -0.02 5.42 14 9 N -0.54 -27.85 5.44 -189.20 -1.03 -28.88 14 10 C 0.35 16.36 7.62 133.11 1.01 17.38 14 11 C -0.27 -10.88 9.33 22.52 0.21 -10.67 14 12 C 0.00 0.11 9.93 22.46 0.22 0.33 14 13 C -0.27 -9.01 6.25 22.44 0.14 -8.87 14 14 Br -0.05 -1.41 33.73 -20.37 -0.69 -2.09 14 15 C 0.19 6.91 10.93 84.68 0.93 7.83 14 16 N -0.59 -26.31 10.39 -193.15 -2.01 -28.32 14 17 H 0.28 14.00 8.31 -92.71 -0.77 13.23 14 18 H 0.39 21.27 8.01 -92.71 -0.74 20.53 14 19 H 0.13 5.26 5.94 -2.91 -0.02 5.25 14 20 H 0.15 4.24 8.06 -2.91 -0.02 4.22 14 21 H 0.17 5.14 8.06 -2.91 -0.02 5.11 14 Total: -1.00 -54.60 216.62 2.89 -51.71 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.53 Total: 25.89 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 3.78 Total: -10.26 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -2.75 Total: -106.05 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 35 Polarization: -1.41 SS G_CDS: -0.69 Total: -2.09 kcal Total: -54.60 2.89 -51.71 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259928003.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.350 kcal (2) G-P(sol) polarization free energy of solvation -54.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds