Wall clock time and date at job start Mon Mar 30 2020 05:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35900 * 117.00352 * 2 1 4 4 C 1.34665 * 122.45009 * 89.97646 * 3 2 1 5 5 C 1.50701 * 124.66102 * 359.96658 * 4 3 2 6 6 S 1.75669 * 110.67214 * 180.02562 * 4 3 2 7 7 C 1.75813 * 91.50225 * 0.02562 * 6 4 3 8 8 C 1.39065 * 125.37613 * 179.97438 * 7 6 4 9 9 H 1.08000 * 119.99369 * 180.02562 * 8 7 6 10 10 C 1.40548 * 120.00046 * 359.74299 * 8 7 6 11 11 N 1.30546 * 120.00220 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00083 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47210 * 89.99976 * 12 10 8 14 14 H 1.48496 * 109.47530 * 210.00414 * 12 10 8 15 15 H 1.48502 * 109.46888 * 330.00297 * 12 10 8 16 16 C 1.38712 * 122.45201 * 270.23617 * 3 2 1 17 17 C 1.46429 * 123.25581 * 0.04766 * 16 3 2 18 18 O 1.21657 * 120.00100 * 270.17815 * 17 16 3 19 19 O 1.34927 * 120.00415 * 90.18193 * 17 16 3 20 20 H 1.08998 * 109.47247 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47133 * 300.00014 * 1 2 3 22 22 H 1.09000 * 109.47206 * 59.99632 * 1 2 3 23 23 H 1.08999 * 109.46855 * 180.02562 * 5 4 3 24 24 H 1.08999 * 109.46807 * 300.01202 * 5 4 3 25 25 H 1.08990 * 109.47217 * 60.01593 * 5 4 3 26 26 H 0.97004 * 120.00459 * 179.97438 * 11 10 8 27 27 H 0.96701 * 114.00413 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3737 1.8548 1.1364 5 6 2.1064 1.3332 2.5247 6 16 3.1540 3.3873 0.7778 7 6 3.0112 3.1081 -0.9521 8 6 3.4517 3.9746 -1.9466 9 1 3.3188 3.7152 -2.9865 10 6 4.0643 5.1907 -1.5983 11 7 4.2203 5.5065 -0.3413 12 14 4.6552 6.3551 -2.9341 13 1 3.5619 7.2943 -3.2914 14 1 5.8257 7.1233 -2.4390 15 1 5.0480 5.5732 -4.1340 16 6 2.3797 1.8762 -1.1705 17 6 2.1003 1.3424 -2.5051 18 8 2.9213 0.6390 -3.0630 19 8 0.9325 1.6308 -3.1163 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 2.4716 2.0511 3.2591 24 1 1.0342 1.1900 2.6588 25 1 2.6199 0.3814 2.6603 26 1 4.6434 6.3457 -0.1009 27 1 0.8391 1.2343 -3.9933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260121516.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:15 Heat of formation + Delta-G solvation = -130.371236 kcal Electronic energy + Delta-G solvation = -15402.261813 eV Core-core repulsion = 12637.036591 eV Total energy + Delta-G solvation = -2765.225221 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25003 -37.90046 -35.21810 -34.86216 -33.68078 -30.75602 -27.99402 -26.41145 -24.55073 -22.77790 -20.18309 -18.90783 -17.72476 -16.95214 -15.90505 -15.79134 -15.36403 -14.65963 -14.36705 -13.92915 -13.58523 -12.96447 -12.51306 -12.47860 -11.86040 -11.82682 -11.79838 -11.36070 -11.25376 -10.77910 -10.64364 -10.52096 -10.23468 -9.88324 -9.58942 -9.16003 -8.99935 -7.54564 -7.28760 -6.87180 -4.84078 2.36594 2.80937 2.86396 2.91365 3.21475 3.28563 3.40420 3.53506 3.84326 4.45681 4.66181 5.04512 5.85835 5.91726 6.08163 6.21969 6.29207 6.41971 6.52907 6.70293 6.86604 7.00139 7.27575 7.31361 7.64764 7.76458 7.93413 8.20153 8.58132 8.93280 9.51257 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.010634 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.602682 B = 2632.484907 C = 3541.295958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.339 6.339 3 C 0.168 3.832 4 C -0.391 4.391 5 C -0.039 4.039 6 S 0.174 5.826 7 C 0.069 3.931 8 C -0.366 4.366 9 H 0.096 0.904 10 C 0.055 3.945 11 N -0.762 5.762 12 Si 0.939 3.061 13 H -0.261 1.261 14 H -0.268 1.268 15 H -0.255 1.255 16 C -0.381 4.381 17 C 0.584 3.416 18 O -0.535 6.535 19 O -0.514 6.514 20 H 0.078 0.922 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.305 0.695 27 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.650 0.779 0.266 3.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.256 6.256 3 C 0.115 3.885 4 C -0.506 4.506 5 C -0.097 4.097 6 S 0.434 5.566 7 C -0.052 4.052 8 C -0.401 4.401 9 H 0.114 0.886 10 C -0.169 4.169 11 N -0.388 5.388 12 Si 0.761 3.239 13 H -0.185 1.185 14 H -0.193 1.193 15 H -0.178 1.178 16 C -0.388 4.388 17 C 0.427 3.573 18 O -0.424 6.424 19 O -0.322 6.322 20 H 0.096 0.904 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.665 1.843 1.632 3.628 hybrid contribution -0.605 -0.773 -1.998 2.226 sum -3.270 1.069 -0.366 3.460 Atomic orbital electron populations 1.22773 0.81028 1.01303 1.00344 1.85913 1.18508 1.26613 1.94547 1.16627 0.96620 0.85003 0.90257 1.24537 1.23033 1.06079 0.96985 1.19670 0.99339 0.99002 0.91707 1.84481 1.60773 1.12538 0.98783 1.21390 0.94273 0.92678 0.96851 1.19220 1.26799 0.99142 0.94962 0.88593 1.26366 0.94049 0.99078 0.97438 1.68639 1.28838 1.23183 1.18124 0.85734 0.79101 0.78929 0.80106 1.18530 1.19272 1.17802 1.17252 1.29754 1.02726 0.89064 1.20418 0.77146 0.74498 0.85191 1.90772 1.47552 1.37107 1.66941 1.85293 1.40914 1.71551 1.34473 0.90397 0.94265 0.93929 0.93419 0.93984 0.93380 0.88208 0.76208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 11.13 101.05 1.12 1.88 15 2 O -0.34 -7.90 9.94 -19.43 -0.19 -8.10 15 3 C 0.17 4.24 5.69 -40.67 -0.23 4.01 15 4 C -0.39 -9.30 6.50 -35.57 -0.23 -9.53 15 5 C -0.04 -0.76 10.13 36.01 0.36 -0.40 15 6 S 0.17 4.23 20.18 -107.50 -2.17 2.06 15 7 C 0.07 1.83 6.21 -38.56 -0.24 1.59 15 8 C -0.37 -9.23 8.96 -38.40 -0.34 -9.58 15 9 H 0.10 2.38 7.45 -52.49 -0.39 1.99 15 10 C 0.05 1.24 5.50 -17.23 -0.09 1.14 15 11 N -0.76 -17.26 10.63 55.58 0.59 -16.67 15 12 Si 0.94 16.83 29.57 -169.99 -5.03 11.80 15 13 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 14 H -0.27 -4.60 7.11 56.52 0.40 -4.20 15 15 H -0.25 -4.63 7.11 56.52 0.40 -4.23 15 16 C -0.38 -10.09 5.76 -105.71 -0.61 -10.70 15 17 C 0.58 14.59 6.93 34.03 0.24 14.83 15 18 O -0.53 -14.34 17.85 -19.39 -0.35 -14.69 15 19 O -0.51 -10.57 13.56 -41.11 -0.56 -11.13 15 20 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 21 H 0.04 0.67 7.97 -51.93 -0.41 0.25 15 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.04 0.76 7.97 -51.93 -0.41 0.34 15 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.30 6.07 8.29 -40.82 -0.34 5.73 15 27 H 0.38 5.74 8.98 45.56 0.41 6.15 15 LS Contribution 263.09 15.07 3.96 3.96 Total: -1.00 -30.20 263.09 -5.40 -35.60 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -1.63 Total: 3.89 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -0.03 Total: -6.75 kcal Atomic # 7 Polarization: -17.26 SS G_CDS: 0.59 Total: -16.67 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.10 Total: -33.91 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.17 Total: 2.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.20 -5.40 -35.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121516.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.771 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds