Wall clock time and date at job start Mon Mar 30 2020 05:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30808 * 1 3 3 Si 1.86796 * 120.00256 * 2 1 4 4 H 1.48504 * 109.47125 * 274.98318 * 3 2 1 5 5 H 1.48502 * 109.46988 * 34.98139 * 3 2 1 6 6 H 1.48497 * 109.47352 * 154.97970 * 3 2 1 7 7 C 1.40166 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00046 * 186.03896 * 7 2 1 9 9 C 1.39754 * 119.99764 * 6.04009 * 7 2 1 10 10 C 1.39375 * 126.23735 * 174.25851 * 9 7 2 11 11 C 1.40243 * 106.55866 * 179.97438 * 10 9 7 12 12 C 1.35281 * 107.25833 * 359.85242 * 11 10 9 13 13 O 1.34700 * 109.17785 * 0.26972 * 12 11 10 14 14 C 1.51910 * 126.75454 * 180.47220 * 12 11 10 15 15 S 1.81709 * 108.33190 * 341.58350 * 14 12 11 16 16 O 1.42102 * 108.73333 * 291.63920 * 15 14 12 17 17 O 1.42101 * 108.73096 * 160.21333 * 15 14 12 18 18 C 1.81789 * 100.98839 * 45.92557 * 15 14 12 19 19 C 1.50545 * 124.27227 * 179.81520 * 11 10 9 20 20 H 0.97002 * 119.99660 * 359.97438 * 1 2 3 21 21 H 1.08001 * 126.72292 * 359.97438 * 10 9 7 22 22 H 1.09005 * 109.89932 * 221.84611 * 14 12 11 23 23 H 1.09000 * 109.60440 * 101.14956 * 14 12 11 24 24 H 1.09000 * 109.57453 * 53.87172 * 18 15 14 25 25 H 1.08998 * 109.57750 * 174.26205 * 18 15 14 26 26 H 1.08999 * 109.19603 * 40.63179 * 19 11 10 27 27 H 1.09000 * 109.16082 * 281.32353 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3843 2.1072 -1.3948 5 1 1.4962 2.6199 0.8027 6 1 3.5883 1.4120 0.5921 7 6 2.0089 -1.2139 0.0005 8 1 3.0843 -1.2164 0.0989 9 6 1.3159 -2.4208 -0.1263 10 6 1.8835 -3.6874 -0.2538 11 6 0.8186 -4.5947 -0.3509 12 6 -0.3268 -3.8785 -0.2786 13 8 -0.0244 -2.5724 -0.1476 14 6 -1.7441 -4.4230 -0.3285 15 16 -1.6894 -6.0946 -1.0388 16 8 -1.3278 -5.9964 -2.4096 17 8 -2.8801 -6.7821 -0.6799 18 6 -0.2981 -6.8170 -0.1184 19 6 0.9844 -6.0829 -0.5067 20 1 -0.4850 0.8401 0.0004 21 1 2.9372 -3.9238 -0.2739 22 1 -2.3665 -3.7808 -0.9516 23 1 -2.1545 -4.4674 0.6803 24 1 -0.4720 -6.7070 0.9520 25 1 -0.2040 -7.8737 -0.3684 26 1 1.7991 -6.4217 0.1333 27 1 1.2265 -6.3091 -1.5451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174147.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:52 Heat of formation + Delta-G solvation = -99.652967 kcal Electronic energy + Delta-G solvation = -15415.340165 eV Core-core repulsion = 12651.446988 eV Total energy + Delta-G solvation = -2763.893177 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.47353 -38.14391 -37.12662 -36.31774 -35.48524 -32.60599 -31.67683 -29.68382 -25.87934 -24.69800 -21.90063 -21.18157 -19.73335 -18.74238 -17.77366 -17.27825 -17.02707 -16.79257 -16.43336 -16.05273 -15.14981 -14.84474 -14.46238 -14.17929 -13.77068 -13.33359 -13.25050 -13.15092 -13.08997 -12.90106 -12.88248 -12.47832 -12.30601 -12.06903 -11.79264 -11.36228 -11.26172 -9.99504 -9.19368 -8.81831 -6.52318 -0.94796 1.11828 1.36556 1.53002 1.54039 1.63847 2.02626 2.14590 2.56403 2.81507 3.12678 3.21790 3.72844 3.83386 4.04947 4.13096 4.31302 4.41799 4.59256 4.87727 4.96499 5.04876 5.24342 5.37666 5.56640 5.92796 6.20048 6.54310 6.62581 7.15547 8.20610 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.052068 B = 0.006721 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.629275 B = 4165.173342 C = 4492.797880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.021 3.979 3 Si 1.006 2.994 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.247 1.247 7 C -0.477 4.477 8 H 0.115 0.885 9 C 0.174 3.826 10 C -0.405 4.405 11 C -0.137 4.137 12 C -0.169 4.169 13 O -0.184 6.184 14 C -0.502 4.502 15 S 2.453 3.547 16 O -0.971 6.971 17 O -0.963 6.963 18 C -0.573 4.573 19 C -0.035 4.035 20 H 0.294 0.706 21 H 0.130 0.870 22 H 0.128 0.872 23 H 0.151 0.849 24 H 0.158 0.842 25 H 0.176 0.824 26 H 0.111 0.889 27 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -7.313 1.757 7.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.196 4.196 3 Si 0.824 3.176 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.170 1.170 7 C -0.506 4.506 8 H 0.133 0.867 9 C 0.121 3.879 10 C -0.425 4.425 11 C -0.139 4.139 12 C -0.217 4.217 13 O -0.083 6.083 14 C -0.629 4.629 15 S 2.636 3.364 16 O -0.968 6.968 17 O -0.960 6.960 18 C -0.705 4.705 19 C -0.073 4.073 20 H 0.104 0.896 21 H 0.148 0.852 22 H 0.146 0.854 23 H 0.168 0.832 24 H 0.176 0.824 25 H 0.194 0.806 26 H 0.129 0.871 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.902 -7.375 1.111 7.513 hybrid contribution 0.629 1.340 0.546 1.578 sum -0.273 -6.035 1.656 6.264 Atomic orbital electron populations 1.69859 1.09492 1.31445 1.33627 1.27236 0.95791 1.05742 0.90822 0.84828 0.79023 0.74136 0.79585 1.18555 1.18964 1.17015 1.19237 0.95801 0.88499 1.47042 0.86724 1.20131 0.79209 0.95683 0.92875 1.21500 0.98349 0.91518 1.31142 1.19929 0.92111 0.96743 1.05082 1.21002 0.93227 0.83472 1.24025 1.84401 1.24813 1.25239 1.73801 1.28929 0.96896 1.22553 1.14472 1.06940 0.76948 0.76587 0.75892 1.93518 1.84792 1.86000 1.32496 1.93545 1.46076 1.70933 1.85451 1.29890 1.12269 1.12537 1.15842 1.19622 0.97106 0.86703 1.03859 0.89581 0.85225 0.85356 0.83159 0.82375 0.80639 0.87105 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.06 12.04 21.87 0.26 -43.79 15 2 C 0.02 1.06 5.49 85.31 0.47 1.53 15 3 Si 1.01 37.02 29.57 68.60 2.03 39.05 15 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 5 H -0.27 -9.27 7.11 99.48 0.71 -8.56 15 6 H -0.25 -8.54 7.11 99.48 0.71 -7.83 15 7 C -0.48 -25.68 9.32 23.10 0.22 -25.47 15 8 H 0.11 5.67 7.86 -2.92 -0.02 5.65 15 9 C 0.17 9.78 6.79 22.91 0.16 9.94 15 10 C -0.40 -20.17 10.83 23.03 0.25 -19.92 15 11 C -0.14 -5.94 5.83 -20.11 -0.12 -6.06 15 12 C -0.17 -7.93 7.09 25.39 0.18 -7.75 15 13 O -0.18 -10.52 9.00 -12.40 -0.11 -10.63 15 14 C -0.50 -17.71 6.80 71.62 0.49 -17.22 15 15 S 2.45 72.14 5.33 -56.49 -0.30 71.84 15 16 O -0.97 -36.29 17.85 -127.39 -2.27 -38.56 15 17 O -0.96 -30.45 18.11 -127.39 -2.31 -32.76 15 18 C -0.57 -12.66 6.39 71.91 0.46 -12.20 15 19 C -0.04 -1.04 5.75 29.73 0.17 -0.87 15 20 H 0.29 14.10 8.30 -92.71 -0.77 13.33 15 21 H 0.13 5.91 8.06 -2.91 -0.02 5.89 15 22 H 0.13 4.52 8.14 -2.39 -0.02 4.50 15 23 H 0.15 4.40 8.14 -2.39 -0.02 4.38 15 24 H 0.16 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.18 2.44 8.14 -2.39 -0.02 2.42 15 26 H 0.11 2.80 8.14 -2.39 -0.02 2.78 15 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 Total: -1.00 -74.27 250.53 0.76 -73.51 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.19 Total: 19.37 kcal Atomic # 6 Polarization: -80.29 SS G_CDS: 2.27 Total: -78.02 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.26 Total: -43.79 kcal Atomic # 8 Polarization: -77.26 SS G_CDS: -4.69 Total: -81.95 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Atomic # 16 Polarization: 72.14 SS G_CDS: -0.30 Total: 71.84 kcal Total: -74.27 0.76 -73.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174147.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.142 kcal (2) G-P(sol) polarization free energy of solvation -74.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds