Wall clock time and date at job start Mon Mar 30 2020 05:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30807 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48500 * 109.46759 * 240.00028 * 3 2 1 5 5 H 1.48510 * 109.46751 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47247 * 119.99556 * 3 2 1 7 7 C 1.40158 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.39744 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.39445 * 126.23864 * 179.97438 * 9 7 2 11 11 C 1.39881 * 106.36422 * 179.72473 * 10 9 7 12 12 C 1.35285 * 107.84025 * 359.85516 * 11 10 9 13 13 O 1.34853 * 126.24136 * 359.68003 * 9 7 2 14 14 C 1.50831 * 127.76949 * 180.34712 * 12 11 10 15 15 C 1.52719 * 110.92029 * 340.51573 * 14 12 11 16 16 S 1.81794 * 108.92105 * 52.88144 * 15 14 12 17 17 O 1.42106 * 108.74511 * 48.31484 * 16 15 14 18 18 O 1.42096 * 108.74568 * 179.77280 * 16 15 14 19 19 C 1.51036 * 124.82470 * 179.60181 * 11 10 9 20 20 H 0.96992 * 120.00652 * 0.02562 * 1 2 3 21 21 H 1.08000 * 126.81696 * 359.68176 * 10 9 7 22 22 H 1.09003 * 109.18471 * 100.89342 * 14 12 11 23 23 H 1.09005 * 109.18888 * 220.14084 * 14 12 11 24 24 H 1.09005 * 109.56026 * 172.70989 * 15 14 12 25 25 H 1.08995 * 109.56447 * 293.04421 * 15 14 12 26 26 H 1.08996 * 109.62526 * 281.83352 * 19 11 10 27 27 H 1.09005 * 109.62205 * 42.39045 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 3.0958 1.6964 -1.2125 5 1 1.2769 2.7465 -0.0006 6 1 3.0957 1.6966 1.2125 7 6 2.0089 -1.2138 0.0005 8 1 3.0889 -1.2137 0.0001 9 6 1.3102 -2.4240 0.0005 10 6 1.8721 -3.7003 0.0005 11 6 0.8026 -4.6018 0.0070 12 6 -0.3443 -3.8842 0.0139 13 8 -0.0303 -2.5707 0.0061 14 6 -1.7597 -4.4050 0.0297 15 6 -1.8115 -5.8578 -0.4382 16 16 -0.6325 -6.8350 0.5414 17 8 -0.8248 -6.5371 1.9175 18 8 -0.6875 -8.1867 0.1067 19 6 0.9421 -6.1057 0.0007 20 1 -0.4851 0.8399 -0.0004 21 1 2.9242 -3.9442 -0.0043 22 1 -2.1537 -4.3408 1.0440 23 1 -2.3738 -3.7935 -0.6315 24 1 -2.8182 -6.2512 -0.2964 25 1 -1.5423 -5.9113 -1.4931 26 1 1.1766 -6.4473 -1.0074 27 1 1.7371 -6.4024 0.6849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260222339.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:50 Heat of formation + Delta-G solvation = -99.966656 kcal Electronic energy + Delta-G solvation = -15403.350663 eV Core-core repulsion = 12639.443883 eV Total energy + Delta-G solvation = -2763.906780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.46989 -38.10613 -37.09676 -36.20461 -35.26722 -33.81570 -31.11078 -28.73786 -27.06768 -24.16398 -21.94551 -21.09683 -19.78468 -18.96137 -17.65603 -17.20833 -17.08470 -16.88058 -16.34957 -15.98729 -15.16327 -14.62280 -14.44648 -14.18149 -13.80506 -13.31761 -13.21198 -13.17129 -13.04371 -13.01557 -12.92177 -12.65242 -12.45668 -12.04010 -11.74402 -11.32577 -11.10486 -10.08797 -9.18026 -8.79961 -6.50927 -0.91540 1.14098 1.37746 1.52468 1.53795 1.69811 2.01195 2.15873 2.64576 2.73528 3.11480 3.17932 3.65138 3.82280 4.04745 4.20842 4.31822 4.47941 4.57412 4.80985 4.90275 5.05610 5.18799 5.31937 5.56053 5.92843 6.18841 6.53942 6.61864 7.14897 8.22025 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.060939 B = 0.006443 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.364789 B = 4344.677389 C = 4595.927792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.023 3.977 3 Si 1.004 2.996 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.478 4.478 8 H 0.112 0.888 9 C 0.176 3.824 10 C -0.411 4.411 11 C -0.122 4.122 12 C -0.180 4.180 13 O -0.178 6.178 14 C -0.009 4.009 15 C -0.572 4.572 16 S 2.442 3.558 17 O -0.974 6.974 18 O -0.965 6.965 19 C -0.519 4.519 20 H 0.295 0.705 21 H 0.123 0.877 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.176 0.824 25 H 0.160 0.840 26 H 0.159 0.841 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -5.337 -2.664 6.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.507 4.507 8 H 0.129 0.871 9 C 0.124 3.876 10 C -0.432 4.432 11 C -0.125 4.125 12 C -0.228 4.228 13 O -0.077 6.077 14 C -0.047 4.047 15 C -0.703 4.703 16 S 2.628 3.372 17 O -0.971 6.971 18 O -0.962 6.962 19 C -0.648 4.648 20 H 0.106 0.894 21 H 0.141 0.859 22 H 0.104 0.896 23 H 0.117 0.883 24 H 0.194 0.806 25 H 0.178 0.822 26 H 0.177 0.823 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.131 -5.763 -2.031 6.866 hybrid contribution 0.855 1.254 -0.466 1.588 sum -2.276 -4.508 -2.497 5.634 Atomic orbital electron populations 1.69818 1.09282 1.31592 1.33216 1.27175 0.95853 1.05502 0.90873 0.84911 0.78396 0.73915 0.80492 1.17703 1.18911 1.17951 1.19169 0.95321 0.88454 1.47706 0.87056 1.20027 0.79435 0.95341 0.92810 1.21383 0.98127 0.91418 1.32291 1.18763 0.93192 0.92828 1.07685 1.22359 0.96194 0.82600 1.21690 1.84459 1.24307 1.24708 1.74194 1.19238 0.89065 0.92988 1.03452 1.29841 1.18342 1.06039 1.16083 1.07094 0.79132 0.75099 0.75867 1.93524 1.84996 1.86137 1.32450 1.93540 1.86331 1.32497 1.83861 1.28725 1.22569 0.99591 1.13884 0.89433 0.85944 0.89608 0.88306 0.80603 0.82220 0.82277 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.76 12.01 21.87 0.26 -42.50 15 2 C 0.02 1.17 5.50 85.31 0.47 1.64 15 3 Si 1.00 36.59 29.56 68.60 2.03 38.61 15 4 H -0.25 -8.79 7.11 99.48 0.71 -8.08 15 5 H -0.27 -9.09 7.11 99.48 0.71 -8.38 15 6 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 7 C -0.48 -25.70 9.32 23.10 0.22 -25.49 15 8 H 0.11 5.55 7.85 -2.91 -0.02 5.52 15 9 C 0.18 9.93 6.79 22.93 0.16 10.09 15 10 C -0.41 -20.99 10.86 22.96 0.25 -20.74 15 11 C -0.12 -5.41 5.87 -20.04 -0.12 -5.53 15 12 C -0.18 -8.29 7.01 25.05 0.18 -8.11 15 13 O -0.18 -9.97 8.98 -15.51 -0.14 -10.11 15 14 C -0.01 -0.32 5.86 29.80 0.17 -0.14 15 15 C -0.57 -13.33 6.37 71.89 0.46 -12.88 15 16 S 2.44 69.98 5.36 -56.49 -0.30 69.68 15 17 O -0.97 -36.13 17.84 -127.39 -2.27 -38.40 15 18 O -0.97 -29.68 18.11 -127.39 -2.31 -31.99 15 19 C -0.52 -16.41 6.66 71.34 0.48 -15.93 15 20 H 0.30 13.82 8.30 -92.71 -0.77 13.05 15 21 H 0.12 5.85 8.06 -2.91 -0.02 5.83 15 22 H 0.09 2.82 8.13 -2.39 -0.02 2.80 15 23 H 0.10 3.07 8.14 -2.38 -0.02 3.05 15 24 H 0.18 2.71 8.14 -2.38 -0.02 2.69 15 25 H 0.16 2.97 8.14 -2.39 -0.02 2.95 15 26 H 0.16 3.99 8.14 -2.39 -0.02 3.97 15 27 H 0.14 4.14 8.14 -2.38 -0.02 4.12 15 Total: -1.00 -73.27 250.46 0.71 -72.56 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.19 Total: 19.25 kcal Atomic # 6 Polarization: -79.35 SS G_CDS: 2.25 Total: -77.09 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.26 Total: -42.50 kcal Atomic # 8 Polarization: -75.79 SS G_CDS: -4.72 Total: -80.51 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 16 Polarization: 69.98 SS G_CDS: -0.30 Total: 69.68 kcal Total: -73.27 0.71 -72.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260222339.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.406 kcal (2) G-P(sol) polarization free energy of solvation -73.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds