Wall clock time and date at job start Mon Mar 30 2020 05:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99676 * 2 1 4 4 H 1.48494 * 109.47239 * 269.99810 * 3 2 1 5 5 H 1.48501 * 109.47039 * 30.00440 * 3 2 1 6 6 H 1.48500 * 109.46775 * 149.99781 * 3 2 1 7 7 C 1.37882 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46977 * 180.02562 * 9 7 2 11 11 C 1.38356 * 119.98476 * 124.72139 * 10 9 7 12 12 N 1.32141 * 120.00937 * 180.27316 * 11 10 9 13 13 C 1.32225 * 119.99143 * 0.02562 * 12 11 10 14 14 Br 1.89097 * 120.01870 * 180.02562 * 13 12 11 15 15 C 1.38481 * 119.97308 * 359.97438 * 13 12 11 16 16 N 1.32124 * 119.98661 * 0.02562 * 15 13 12 17 17 H 0.96990 * 120.00479 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.47257 * 60.00023 * 9 7 2 19 19 H 1.09005 * 109.47464 * 299.99979 * 9 7 2 20 20 H 1.07992 * 119.99891 * 0.25867 * 11 10 9 21 21 H 1.08002 * 120.00965 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.1610 -4.6138 0.9845 12 7 3.0228 -5.6154 0.9880 13 6 3.9520 -5.6912 0.0504 14 35 5.1853 -7.1246 0.0544 15 6 4.0211 -4.7209 -0.9352 16 7 3.1589 -3.7198 -0.9379 17 1 -0.4850 0.8399 -0.0004 18 1 0.6241 -2.5567 -0.8903 19 1 0.6247 -2.5572 0.8897 20 1 1.4025 -4.5515 1.7506 21 1 4.7801 -4.7820 -1.7011 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260425033.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:14 Heat of formation + Delta-G solvation = 38.234492 kcal Electronic energy + Delta-G solvation = -9835.064708 eV Core-core repulsion = 7757.139044 eV Total energy + Delta-G solvation = -2077.925664 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.64392 -34.50094 -33.27933 -32.22020 -30.48179 -27.48191 -24.53301 -23.86311 -21.43891 -17.42523 -16.40545 -16.28443 -15.43041 -14.59316 -14.48224 -13.12226 -12.45788 -12.19370 -11.70159 -11.26454 -11.14977 -10.85415 -10.72912 -10.55488 -10.45363 -10.02545 -9.57840 -8.70299 -8.54817 -8.39830 -6.15518 -4.18199 1.03574 1.43466 1.45910 3.27331 3.33350 3.37256 4.00952 4.37965 4.60112 4.63334 4.78751 5.21438 5.54602 5.70961 5.77129 6.70729 7.20116 7.28727 7.50519 7.80171 8.06749 8.24492 8.84049 9.45464 10.95317 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.071392 B = 0.005719 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.105297 B = 4895.211420 C = 5125.546200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.060 0.940 9 C 0.059 3.941 10 C 0.147 3.853 11 C 0.044 3.956 12 N -0.419 5.419 13 C 0.032 3.968 14 Br -0.018 7.018 15 C 0.091 3.909 16 N -0.420 5.420 17 H 0.264 0.736 18 H 0.051 0.949 19 H 0.045 0.955 20 H 0.175 0.825 21 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -12.619 -0.102 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.022 3.978 10 C 0.007 3.993 11 C -0.119 4.119 12 N -0.134 5.134 13 C -0.187 4.187 14 Br 0.064 6.936 15 C -0.072 4.072 16 N -0.135 5.135 17 H 0.074 0.926 18 H 0.069 0.931 19 H 0.063 0.937 20 H 0.192 0.808 21 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.443 -13.037 -0.098 15.532 hybrid contribution 0.197 1.152 0.058 1.170 sum 8.639 -11.885 -0.040 14.693 Atomic orbital electron populations 1.69929 1.05997 1.27165 1.50165 1.24980 0.94949 0.99400 0.94941 0.86442 0.79688 0.82740 0.78293 1.20434 1.21094 1.19875 1.20910 0.93111 0.89203 1.51468 0.92160 1.18432 0.91531 0.88356 0.99522 1.23535 0.92819 0.95154 0.87787 1.23810 0.97828 0.90430 0.99822 1.68042 1.01536 1.22485 1.21367 1.23678 0.99392 0.97453 0.98140 1.96685 1.54499 1.43837 1.98563 1.23785 0.97645 0.89274 0.96507 1.68666 1.02089 1.18988 1.23803 0.92621 0.93081 0.93655 0.80790 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.58 14 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 14 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 14 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 14 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 14 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 14 7 C -0.51 -13.75 8.92 -34.44 -0.31 -14.05 14 8 H 0.06 1.65 7.69 -52.49 -0.40 1.25 14 9 C 0.06 1.43 5.39 -29.03 -0.16 1.28 14 10 C 0.15 3.08 6.12 -82.41 -0.50 2.57 14 11 C 0.04 0.81 10.85 -17.38 -0.19 0.62 14 12 N -0.42 -7.54 10.47 -11.45 -0.12 -7.66 14 13 C 0.03 0.53 7.18 -17.29 -0.12 0.40 14 14 Br -0.02 -0.24 33.89 -68.01 -2.30 -2.55 14 15 C 0.09 1.54 10.97 -17.34 -0.19 1.35 14 16 N -0.42 -8.69 10.13 -9.26 -0.09 -8.79 14 17 H 0.26 7.09 8.31 -40.82 -0.34 6.75 14 18 H 0.05 1.31 8.14 -51.93 -0.42 0.89 14 19 H 0.05 1.08 7.88 -51.93 -0.41 0.67 14 20 H 0.18 2.72 7.95 -52.49 -0.42 2.30 14 21 H 0.17 2.27 8.06 -52.49 -0.42 1.84 14 LS Contribution 221.56 15.07 3.34 3.34 Total: -1.00 -28.73 221.56 -6.24 -34.98 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: -1.21 Total: -4.56 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.57 Total: -6.31 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.52 Total: -41.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -2.30 Total: -2.55 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -28.73 -6.24 -34.98 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425033.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.210 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds