Wall clock time and date at job start Mon Mar 30 2020 05:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99676 * 2 1 4 4 H 1.48494 * 109.47239 * 269.99810 * 3 2 1 5 5 H 1.48501 * 109.47039 * 30.00440 * 3 2 1 6 6 H 1.48500 * 109.46775 * 149.99781 * 3 2 1 7 7 C 1.37882 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99796 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46977 * 180.02562 * 9 7 2 11 11 C 1.38356 * 119.98476 * 124.72139 * 10 9 7 12 12 N 1.32141 * 120.00937 * 180.27316 * 11 10 9 13 13 C 1.32225 * 119.99143 * 0.02562 * 12 11 10 14 14 Br 1.89097 * 120.01870 * 180.02562 * 13 12 11 15 15 C 1.38481 * 119.97308 * 359.97438 * 13 12 11 16 16 N 1.32124 * 119.98661 * 0.02562 * 15 13 12 17 17 H 0.96990 * 120.00479 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.47257 * 60.00023 * 9 7 2 19 19 H 1.09005 * 109.47464 * 299.99979 * 9 7 2 20 20 H 1.07992 * 119.99891 * 0.25867 * 11 10 9 21 21 H 1.08002 * 120.00965 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.1610 -4.6138 0.9845 12 7 3.0228 -5.6154 0.9880 13 6 3.9520 -5.6912 0.0504 14 35 5.1853 -7.1246 0.0544 15 6 4.0211 -4.7209 -0.9352 16 7 3.1589 -3.7198 -0.9379 17 1 -0.4850 0.8399 -0.0004 18 1 0.6241 -2.5567 -0.8903 19 1 0.6247 -2.5572 0.8897 20 1 1.4025 -4.5515 1.7506 21 1 4.7801 -4.7820 -1.7011 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260425033.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:14 Heat of formation + Delta-G solvation = 19.478709 kcal Electronic energy + Delta-G solvation = -9835.878020 eV Core-core repulsion = 7757.139044 eV Total energy + Delta-G solvation = -2078.738976 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.09110 -36.14110 -34.99976 -33.79503 -31.99144 -29.20032 -26.13425 -25.49983 -23.12606 -19.00984 -18.26757 -17.76400 -16.98411 -16.26395 -16.07066 -14.62641 -14.34050 -13.87071 -13.52437 -12.85091 -12.75797 -12.63249 -12.42052 -11.97965 -11.87428 -11.61999 -11.50999 -10.64124 -10.07225 -9.93804 -8.22978 -6.32256 -0.39591 0.01714 0.14205 1.41899 1.42694 1.53182 2.38654 2.58745 3.09981 3.20396 3.24746 3.43001 4.07858 4.19269 4.44606 5.15802 5.29726 5.34378 5.69592 6.03441 6.13256 6.71531 6.77335 7.34809 8.87828 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.071392 B = 0.005719 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.105297 B = 4895.211420 C = 5125.546200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.067 3.933 10 C 0.123 3.877 11 C 0.049 3.951 12 N -0.425 5.425 13 C 0.035 3.965 14 Br 0.024 6.976 15 C 0.091 3.909 16 N -0.450 5.450 17 H 0.267 0.733 18 H 0.025 0.975 19 H 0.041 0.959 20 H 0.196 0.804 21 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.636 -13.330 0.037 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.561 4.561 8 H 0.069 0.931 9 C 0.029 3.971 10 C -0.017 4.017 11 C -0.112 4.112 12 N -0.140 5.140 13 C -0.185 4.185 14 Br 0.106 6.894 15 C -0.072 4.072 16 N -0.165 5.165 17 H 0.076 0.924 18 H 0.043 0.957 19 H 0.059 0.941 20 H 0.213 0.787 21 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.936 -13.755 0.050 16.968 hybrid contribution -0.151 1.203 -0.017 1.213 sum 9.786 -12.552 0.034 15.915 Atomic orbital electron populations 1.70026 1.07280 1.28090 1.51031 1.25786 0.95784 1.02738 0.94630 0.85471 0.78512 0.78802 0.78404 1.19992 1.20281 1.19505 1.21178 0.92893 0.90848 1.51183 0.93083 1.18131 0.91870 0.89043 0.98062 1.23041 0.93423 0.95486 0.89702 1.23952 0.98217 0.89690 0.99363 1.68199 1.01855 1.22162 1.21833 1.24180 0.99006 0.98168 0.97104 1.96732 1.52586 1.41591 1.98444 1.24286 0.97334 0.88251 0.97303 1.68514 1.02831 1.20855 1.24306 0.92402 0.95721 0.94059 0.78722 0.78062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.11 13.29 21.45 0.28 -52.82 14 2 C 0.01 0.52 5.46 84.66 0.46 0.98 14 3 Si 0.96 43.42 29.54 68.60 2.03 45.44 14 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 14 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 14 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 14 7 C -0.52 -28.73 8.92 25.60 0.23 -28.50 14 8 H 0.05 2.83 7.69 -2.91 -0.02 2.81 14 9 C 0.07 3.32 5.39 29.10 0.16 3.48 14 10 C 0.12 5.17 6.12 42.54 0.26 5.44 14 11 C 0.05 1.77 10.85 84.67 0.92 2.69 14 12 N -0.42 -14.52 10.47 -190.15 -1.99 -16.51 14 13 C 0.03 1.08 7.18 84.69 0.61 1.68 14 14 Br 0.02 0.56 33.89 -20.37 -0.69 -0.13 14 15 C 0.09 2.92 10.97 84.71 0.93 3.85 14 16 N -0.45 -18.41 10.13 -183.21 -1.86 -20.27 14 17 H 0.27 14.44 8.31 -92.72 -0.77 13.67 14 18 H 0.02 1.33 8.14 -2.38 -0.02 1.31 14 19 H 0.04 2.03 7.88 -2.38 -0.02 2.01 14 20 H 0.20 5.92 7.95 -2.91 -0.02 5.90 14 21 H 0.20 4.86 8.06 -2.91 -0.02 4.84 14 Total: -1.00 -60.70 221.56 2.58 -58.12 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: 1.24 Total: -3.45 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 3.56 Total: -10.38 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -3.56 Total: -89.60 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 35 Polarization: 0.56 SS G_CDS: -0.69 Total: -0.13 kcal Total: -60.70 2.58 -58.12 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260425033.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.597 kcal (2) G-P(sol) polarization free energy of solvation -60.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds