Wall clock time and date at job start Mon Mar 30 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86794 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47441 * 269.99881 * 3 2 1 5 5 H 1.48505 * 109.46879 * 29.99853 * 3 2 1 6 6 H 1.48505 * 109.47152 * 149.99643 * 3 2 1 7 7 C 1.38812 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00312 * 0.02562 * 7 2 1 9 9 N 1.36904 * 119.99759 * 179.97438 * 7 2 1 10 10 C 1.38853 * 120.00123 * 180.02562 * 9 7 2 11 11 N 1.32508 * 119.71827 * 0.02562 * 10 9 7 12 12 C 1.31873 * 121.63594 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.88162 * 359.97438 * 12 11 10 14 14 C 1.38832 * 119.34433 * 0.25974 * 13 12 11 15 15 C 1.38429 * 118.50139 * 359.49749 * 14 13 12 16 16 Br 1.89095 * 120.46359 * 180.24721 * 15 14 13 17 17 H 0.97004 * 119.99897 * 0.02562 * 1 2 3 18 18 H 0.97001 * 119.99949 * 0.02562 * 9 7 2 19 19 H 1.08004 * 119.55781 * 180.02562 * 12 11 10 20 20 H 1.08002 * 120.32310 * 179.97438 * 13 12 11 21 21 H 1.07998 * 120.74820 * 179.72942 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0097 -1.2022 0.0005 8 1 1.4697 -2.1375 0.0005 9 7 3.3788 -1.2022 0.0000 10 6 4.0730 -2.4047 0.0000 11 7 3.4048 -3.5490 0.0000 12 6 4.0256 -4.7125 -0.0005 13 6 5.4057 -4.7800 -0.0016 14 6 6.1443 -3.6045 0.0034 15 6 5.4658 -2.3979 -0.0015 16 35 6.4165 -0.7633 -0.0022 17 1 -0.4850 0.8401 -0.0004 18 1 3.8638 -0.3622 -0.0004 19 1 3.4475 -5.6248 -0.0009 20 1 5.9047 -5.7378 -0.0016 21 1 7.2240 -3.6308 0.0070 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436884.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:10 Heat of formation + Delta-G solvation = 43.602390 kcal Electronic energy + Delta-G solvation = -10091.721750 eV Core-core repulsion = 8014.028856 eV Total energy + Delta-G solvation = -2077.692894 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.23703 -35.49208 -32.39422 -32.12694 -29.93244 -28.28260 -24.78633 -22.38395 -21.37841 -18.52286 -16.98385 -15.49535 -15.04210 -14.45285 -13.73660 -13.67118 -13.13371 -12.53358 -12.09084 -11.53109 -11.30462 -10.76301 -10.68012 -10.51552 -10.27166 -9.72475 -9.06314 -8.67979 -8.46054 -7.28432 -6.59189 -3.87600 1.88778 2.21327 2.35652 2.99475 2.99988 3.04837 3.91876 4.40166 4.50419 5.10290 5.42191 5.51737 5.86458 6.08496 6.31394 6.62454 6.85339 7.23230 7.37893 7.89309 8.41053 8.72411 9.08191 9.35505 10.50861 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.013166 C = 0.008919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.131056 B = 2126.202029 C = 3138.490421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.866 3.134 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.289 4.289 8 H 0.134 0.866 9 N -0.543 5.543 10 C 0.379 3.621 11 N -0.528 5.528 12 C 0.176 3.824 13 C -0.306 4.306 14 C 0.010 3.990 15 C -0.256 4.256 16 Br -0.086 7.086 17 H 0.279 0.721 18 H 0.390 0.610 19 H 0.144 0.856 20 H 0.118 0.882 21 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.731 -2.105 -0.005 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.691 3.309 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.418 4.418 8 H 0.151 0.849 9 N -0.150 5.150 10 C 0.133 3.867 11 N -0.247 5.247 12 C 0.008 3.992 13 C -0.333 4.333 14 C -0.017 4.017 15 C -0.345 4.345 16 Br -0.003 7.003 17 H 0.090 0.910 18 H 0.228 0.772 19 H 0.162 0.838 20 H 0.136 0.864 21 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.615 -1.058 -0.003 10.667 hybrid contribution 1.233 0.838 0.014 1.491 sum 11.848 -0.220 0.011 11.850 Atomic orbital electron populations 1.69679 1.05585 1.28267 1.45925 1.25097 0.95658 0.98354 0.97220 0.86792 0.80495 0.83782 0.79830 1.18858 1.19336 1.18570 1.19762 0.78959 0.97324 1.45783 0.84869 1.41506 1.07118 1.03625 1.62719 1.17598 0.85568 0.87131 0.96360 1.67392 1.38682 0.96675 1.21926 1.22366 0.91857 0.94681 0.90256 1.21272 0.95124 0.97443 1.19491 1.20873 0.98810 0.90549 0.91487 1.21501 0.92943 0.91035 1.29057 1.96440 1.75046 1.30328 1.98483 0.91019 0.77210 0.83830 0.86358 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.05 13.97 55.49 0.77 -23.27 14 2 C 0.04 1.15 5.50 -17.45 -0.10 1.05 14 3 Si 0.87 19.44 27.73 -169.99 -4.71 14.72 14 4 H -0.26 -5.80 7.11 56.52 0.40 -5.40 14 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 14 6 H -0.26 -5.61 6.52 56.52 0.37 -5.24 14 7 C -0.29 -7.89 10.19 -15.07 -0.15 -8.05 14 8 H 0.13 3.97 7.31 -52.49 -0.38 3.59 14 9 N -0.54 -13.44 5.17 -11.14 -0.06 -13.50 14 10 C 0.38 8.83 7.43 -155.02 -1.15 7.67 14 11 N -0.53 -12.12 9.09 -12.40 -0.11 -12.23 14 12 C 0.18 3.25 11.18 -17.56 -0.20 3.05 14 13 C -0.31 -5.07 10.11 -39.39 -0.40 -5.46 14 14 C 0.01 0.17 9.93 -39.29 -0.39 -0.22 14 15 C -0.26 -5.18 6.27 -39.13 -0.25 -5.42 14 16 Br -0.09 -1.54 32.15 -68.01 -2.19 -3.73 14 17 H 0.28 7.20 8.31 -40.82 -0.34 6.86 14 18 H 0.39 9.12 4.13 -40.82 -0.17 8.95 14 19 H 0.14 2.14 8.06 -52.48 -0.42 1.71 14 20 H 0.12 1.57 8.06 -52.49 -0.42 1.15 14 21 H 0.12 1.75 8.06 -52.49 -0.42 1.33 14 LS Contribution 213.37 15.07 3.22 3.22 Total: -1.00 -28.01 213.37 -6.70 -34.71 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.99 Total: 7.45 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.63 Total: -7.37 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.60 Total: -49.00 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Atomic # 35 Polarization: -1.54 SS G_CDS: -2.19 Total: -3.73 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -28.01 -6.70 -34.71 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436884.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.314 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds