Wall clock time and date at job start Mon Mar 30 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86794 * 120.00225 * 2 1 4 4 H 1.48499 * 109.47441 * 269.99881 * 3 2 1 5 5 H 1.48505 * 109.46879 * 29.99853 * 3 2 1 6 6 H 1.48505 * 109.47152 * 149.99643 * 3 2 1 7 7 C 1.38812 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00312 * 0.02562 * 7 2 1 9 9 N 1.36904 * 119.99759 * 179.97438 * 7 2 1 10 10 C 1.38853 * 120.00123 * 180.02562 * 9 7 2 11 11 N 1.32508 * 119.71827 * 0.02562 * 10 9 7 12 12 C 1.31873 * 121.63594 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.88162 * 359.97438 * 12 11 10 14 14 C 1.38832 * 119.34433 * 0.25974 * 13 12 11 15 15 C 1.38429 * 118.50139 * 359.49749 * 14 13 12 16 16 Br 1.89095 * 120.46359 * 180.24721 * 15 14 13 17 17 H 0.97004 * 119.99897 * 0.02562 * 1 2 3 18 18 H 0.97001 * 119.99949 * 0.02562 * 9 7 2 19 19 H 1.08004 * 119.55781 * 180.02562 * 12 11 10 20 20 H 1.08002 * 120.32310 * 179.97438 * 13 12 11 21 21 H 1.07998 * 120.74820 * 179.72942 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0097 -1.2022 0.0005 8 1 1.4697 -2.1375 0.0005 9 7 3.3788 -1.2022 0.0000 10 6 4.0730 -2.4047 0.0000 11 7 3.4048 -3.5490 0.0000 12 6 4.0256 -4.7125 -0.0005 13 6 5.4057 -4.7800 -0.0016 14 6 6.1443 -3.6045 0.0034 15 6 5.4658 -2.3979 -0.0015 16 35 6.4165 -0.7633 -0.0022 17 1 -0.4850 0.8401 -0.0004 18 1 3.8638 -0.3622 -0.0004 19 1 3.4475 -5.6248 -0.0009 20 1 5.9047 -5.7378 -0.0016 21 1 7.2240 -3.6308 0.0070 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436884.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:09 Heat of formation + Delta-G solvation = 25.872097 kcal Electronic energy + Delta-G solvation = -10092.490593 eV Core-core repulsion = 8014.028856 eV Total energy + Delta-G solvation = -2078.461738 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88816 -37.21719 -34.20281 -33.73984 -31.52646 -29.89632 -26.59831 -23.97165 -23.04886 -20.35211 -18.64717 -17.21934 -16.51342 -16.20133 -15.36341 -15.31057 -14.96050 -14.14075 -13.72961 -13.27503 -12.75642 -12.54599 -12.25894 -12.13207 -12.07679 -11.24394 -10.85697 -10.27783 -10.05831 -8.96133 -8.49832 -5.88480 0.33809 0.67695 0.80590 1.22173 1.27275 1.30056 2.11842 2.73034 2.79840 3.27547 3.94916 4.08685 4.37343 4.55674 4.85019 5.13484 5.35640 5.49305 5.74684 6.10405 6.48447 6.97108 7.17864 7.66091 8.65631 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.027387 B = 0.013166 C = 0.008919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.131056 B = 2126.202029 C = 3138.490421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.928 3.072 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.248 1.248 7 C -0.301 4.301 8 H 0.090 0.910 9 N -0.574 5.574 10 C 0.374 3.626 11 N -0.574 5.574 12 C 0.159 3.841 13 C -0.267 4.267 14 C 0.008 3.992 15 C -0.264 4.264 16 Br -0.063 7.063 17 H 0.280 0.720 18 H 0.393 0.607 19 H 0.178 0.822 20 H 0.168 0.832 21 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.198 -3.306 0.011 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.749 3.251 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.172 1.172 7 C -0.431 4.431 8 H 0.108 0.892 9 N -0.188 5.188 10 C 0.132 3.868 11 N -0.294 5.294 12 C -0.004 4.004 13 C -0.292 4.292 14 C -0.019 4.019 15 C -0.352 4.352 16 Br 0.020 6.980 17 H 0.090 0.910 18 H 0.232 0.768 19 H 0.194 0.806 20 H 0.186 0.814 21 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 14.150 -2.363 0.013 14.346 hybrid contribution 0.521 0.746 0.006 0.910 sum 14.672 -1.618 0.019 14.761 Atomic orbital electron populations 1.69801 1.07177 1.29026 1.49865 1.25769 0.96359 1.01593 0.97239 0.85844 0.79648 0.79340 0.80228 1.18098 1.18728 1.17181 1.19335 0.80432 0.96021 1.47325 0.89218 1.41237 1.05808 1.04170 1.67600 1.18149 0.87037 0.87125 0.94514 1.67411 1.40786 0.98055 1.23162 1.23113 0.93582 0.94414 0.89336 1.21916 0.94252 0.99400 1.13630 1.21458 1.00953 0.89507 0.89967 1.21854 0.92163 0.93433 1.27792 1.96460 1.73805 1.29312 1.98418 0.91023 0.76834 0.80551 0.81427 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 13.97 21.65 0.30 -54.32 14 2 C -0.01 -0.53 5.50 84.87 0.47 -0.06 14 3 Si 0.93 41.13 27.73 68.60 1.90 43.03 14 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 14 5 H -0.26 -11.20 7.11 99.48 0.71 -10.50 14 6 H -0.25 -10.22 6.52 99.48 0.65 -9.57 14 7 C -0.30 -17.37 10.19 84.04 0.86 -16.51 14 8 H 0.09 5.77 7.31 -2.91 -0.02 5.75 14 9 N -0.57 -28.93 5.17 -189.15 -0.98 -29.90 14 10 C 0.37 17.22 7.43 133.12 0.99 18.21 14 11 N -0.57 -26.11 9.09 -193.15 -1.76 -27.87 14 12 C 0.16 5.35 11.18 84.67 0.95 6.30 14 13 C -0.27 -7.30 10.11 22.40 0.23 -7.07 14 14 C 0.01 0.24 9.93 22.46 0.22 0.46 14 15 C -0.26 -9.90 6.27 22.56 0.14 -9.76 14 16 Br -0.06 -2.09 32.15 -20.37 -0.65 -2.75 14 17 H 0.28 15.31 8.31 -92.71 -0.77 14.54 14 18 H 0.39 18.37 4.13 -92.71 -0.38 17.98 14 19 H 0.18 4.61 8.06 -2.91 -0.02 4.59 14 20 H 0.17 3.09 8.06 -2.91 -0.02 3.07 14 21 H 0.16 3.57 8.06 -2.91 -0.02 3.55 14 Total: -1.00 -64.51 213.37 3.48 -61.03 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.82 Total: 19.22 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 3.85 Total: -8.44 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -2.43 Total: -112.09 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.90 Total: 43.03 kcal Atomic # 35 Polarization: -2.09 SS G_CDS: -0.65 Total: -2.75 kcal Total: -64.51 3.48 -61.03 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436884.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.900 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds