Wall clock time and date at job start Mon Mar 30 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86802 * 119.99452 * 2 1 4 4 H 1.48500 * 109.47407 * 274.97848 * 3 2 1 5 5 H 1.48496 * 109.47512 * 34.98346 * 3 2 1 6 6 H 1.48500 * 109.46686 * 154.98047 * 3 2 1 7 7 C 1.40243 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00245 * 186.02494 * 7 2 1 9 9 C 1.40064 * 120.00138 * 6.02356 * 7 2 1 10 10 N 1.32122 * 126.20948 * 354.24172 * 9 7 2 11 11 N 1.26278 * 115.90881 * 180.02562 * 10 9 7 12 12 C 1.30070 * 117.85491 * 359.97438 * 11 10 9 13 13 C 1.50699 * 125.43093 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.60567 * 179.32189 * 13 12 11 15 15 C 1.53858 * 109.61315 * 299.66396 * 13 12 11 16 16 C 1.55037 * 106.94835 * 167.33192 * 15 13 12 17 17 S 1.83455 * 102.09095 * 317.64081 * 16 15 13 18 18 C 1.54271 * 109.60943 * 58.98862 * 13 12 11 19 19 S 1.71238 * 109.13581 * 0.02562 * 12 11 10 20 20 H 0.96995 * 120.00266 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.97451 * 286.53834 * 15 13 12 22 22 H 1.09001 * 109.97221 * 47.81026 * 15 13 12 23 23 H 1.08999 * 110.81154 * 199.53949 * 16 15 13 24 24 H 1.09009 * 111.18505 * 75.90244 * 16 15 13 25 25 H 1.09002 * 110.40283 * 330.91738 * 18 13 12 26 26 H 1.09001 * 110.40243 * 93.21494 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3831 2.1073 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4122 0.5921 7 6 2.0083 -1.2145 -0.0005 8 1 3.0838 -1.2171 0.0976 9 6 1.3138 -2.4241 -0.1284 10 7 0.0011 -2.5721 -0.1487 11 7 -0.4188 -3.7566 -0.2723 12 6 0.4637 -4.7074 -0.3674 13 6 0.1543 -6.1745 -0.5194 14 1 1.0842 -6.7393 -0.5868 15 6 -0.6575 -6.6595 0.6943 16 6 -1.2153 -8.0605 0.3342 17 16 -1.7609 -7.8225 -1.4011 18 6 -0.6809 -6.3979 -1.7970 19 16 2.0330 -4.0264 -0.2911 20 1 -0.4850 0.8400 -0.0004 21 1 -0.0116 -6.7325 1.5693 22 1 -1.4778 -5.9697 0.8932 23 1 -2.0591 -8.3177 0.9745 24 1 -0.4376 -8.8218 0.3956 25 1 -1.2816 -5.5155 -2.0174 26 1 -0.0308 -6.6342 -2.6395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260550525.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:55 Heat of formation + Delta-G solvation = 13.182822 kcal Electronic energy + Delta-G solvation = -12809.460983 eV Core-core repulsion = 10525.506355 eV Total energy + Delta-G solvation = -2283.954628 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81122 -37.52368 -35.91673 -32.03288 -30.70458 -28.51346 -26.19742 -24.80758 -22.75694 -20.90080 -19.34372 -18.37356 -17.44973 -17.05437 -16.63482 -15.76741 -15.36415 -14.83831 -14.71067 -13.86243 -13.65105 -13.52753 -13.22090 -13.01803 -12.89599 -12.70300 -12.61058 -11.99730 -11.93803 -11.51128 -11.08360 -10.62897 -10.16169 -10.11019 -9.92663 -8.81205 -8.71250 -6.91663 0.39134 0.79349 0.95154 1.27991 1.38705 1.40084 1.50818 1.59034 2.12451 2.34126 3.04228 3.54698 3.70928 3.93891 4.05402 4.13996 4.24089 4.57128 4.67591 4.73073 4.77924 4.94660 5.02375 5.14394 5.39287 5.89571 6.03127 6.34692 8.06288 8.75699 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.061395 B = 0.005748 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.954839 B = 4870.161796 C = 5042.993046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.021 3.979 3 Si 1.013 2.987 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.242 1.242 7 C -0.383 4.383 8 H 0.118 0.882 9 C 0.137 3.863 10 N -0.389 5.389 11 N -0.258 5.258 12 C -0.126 4.126 13 C 0.020 3.980 14 H 0.103 0.897 15 C -0.112 4.112 16 C -0.050 4.050 17 S -0.327 6.327 18 C -0.047 4.047 19 S -0.080 6.080 20 H 0.299 0.701 21 H 0.095 0.905 22 H 0.060 0.940 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -6.758 0.887 7.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.164 1.164 7 C -0.427 4.427 8 H 0.136 0.864 9 C -0.112 4.112 10 N -0.238 5.238 11 N -0.096 5.096 12 C -0.409 4.409 13 C -0.004 4.004 14 H 0.121 0.879 15 C -0.152 4.152 16 C -0.197 4.197 17 S -0.102 6.102 18 C -0.197 4.197 19 S 0.165 5.835 20 H 0.110 0.890 21 H 0.113 0.887 22 H 0.079 0.921 23 H 0.138 0.862 24 H 0.135 0.865 25 H 0.088 0.912 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.249 -7.248 0.230 7.593 hybrid contribution 0.810 1.393 0.510 1.690 sum 3.059 -5.855 0.739 6.648 Atomic orbital electron populations 1.70040 1.09812 1.31790 1.24668 1.27413 0.95868 1.05246 0.92165 0.84732 0.79100 0.73290 0.79929 1.18217 1.18674 1.16435 1.19696 0.96488 0.88436 1.38100 0.86387 1.26485 0.91502 0.95618 0.97585 1.72796 1.08974 1.08712 1.33360 1.70638 1.33703 0.96107 1.09175 1.27469 0.90519 1.00509 1.22435 1.20159 0.99572 0.86982 0.93656 0.87910 1.22500 0.99835 0.94905 0.97931 1.24297 1.04777 0.99109 0.91544 1.87368 1.59482 1.43088 1.20240 1.23949 0.98477 0.96979 1.00256 1.83485 1.13724 1.06551 1.79693 0.89018 0.88653 0.92129 0.86242 0.86463 0.91162 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.30 11.95 21.88 0.26 -38.04 15 2 C 0.02 0.96 5.49 85.35 0.47 1.43 15 3 Si 1.01 33.43 29.57 68.60 2.03 35.46 15 4 H -0.26 -8.25 7.11 99.48 0.71 -7.54 15 5 H -0.26 -8.29 7.11 99.48 0.71 -7.59 15 6 H -0.24 -7.37 7.11 99.48 0.71 -6.66 15 7 C -0.38 -19.13 9.42 23.20 0.22 -18.91 15 8 H 0.12 5.22 7.86 -2.91 -0.02 5.20 15 9 C 0.14 7.44 7.18 85.09 0.61 8.05 15 10 N -0.39 -22.84 9.97 -54.06 -0.54 -23.37 15 11 N -0.26 -13.89 11.28 -50.52 -0.57 -14.45 15 12 C -0.13 -5.72 5.99 88.37 0.53 -5.19 15 13 C 0.02 0.70 3.05 -10.82 -0.03 0.67 15 14 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 15 C -0.11 -3.35 5.75 31.58 0.18 -3.16 15 16 C -0.05 -1.15 7.38 72.68 0.54 -0.62 15 17 S -0.33 -9.76 23.26 -56.49 -1.31 -11.08 15 18 C -0.05 -1.58 6.80 72.41 0.49 -1.09 15 19 S -0.08 -3.62 23.23 -56.49 -1.31 -4.93 15 20 H 0.30 13.60 8.29 -92.71 -0.77 12.83 15 21 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15 22 H 0.06 2.17 8.04 -2.39 -0.02 2.15 15 23 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.12 2.13 8.14 -2.38 -0.02 2.11 15 25 H 0.07 2.81 7.69 -2.39 -0.02 2.79 15 26 H 0.10 3.16 8.14 -2.39 -0.02 3.14 15 Total: -1.00 -63.59 254.23 2.76 -60.84 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.19 Total: 14.40 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 3.01 Total: -18.82 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -0.85 Total: -75.87 kcal Atomic # 14 Polarization: 33.43 SS G_CDS: 2.03 Total: 35.46 kcal Atomic # 16 Polarization: -13.39 SS G_CDS: -2.63 Total: -16.01 kcal Total: -63.59 2.76 -60.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550525.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.022 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds