Wall clock time and date at job start Mon Mar 30 2020 05:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48506 * 109.46927 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99809 * 3 2 1 6 6 H 1.48501 * 109.47039 * 60.00225 * 3 2 1 7 7 C 1.40253 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00355 * 180.02562 * 7 2 1 9 9 C 1.40064 * 119.99670 * 359.71992 * 7 2 1 10 10 N 1.32116 * 126.21694 * 0.30305 * 9 7 2 11 11 N 1.26274 * 115.91478 * 179.97438 * 10 9 7 12 12 C 1.30074 * 117.85410 * 0.02562 * 11 10 9 13 13 C 1.50697 * 125.43485 * 180.02562 * 12 11 10 14 14 H 1.08999 * 108.84959 * 182.85283 * 13 12 11 15 15 C 1.52944 * 108.88928 * 64.40463 * 13 12 11 16 16 C 1.55153 * 108.96091 * 209.10971 * 15 13 12 17 17 S 1.83996 * 100.91012 * 41.43805 * 16 15 13 18 18 C 1.53713 * 108.88339 * 301.42530 * 13 12 11 19 19 S 1.71243 * 109.13286 * 359.72214 * 12 11 10 20 20 H 0.96995 * 119.99820 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.60127 * 329.03892 * 15 13 12 22 22 H 1.08991 * 109.60020 * 89.17792 * 15 13 12 23 23 H 1.09006 * 111.13115 * 283.53047 * 16 15 13 24 24 H 1.08995 * 111.13418 * 159.35439 * 16 15 13 25 25 H 1.09000 * 110.34102 * 242.49361 * 18 13 12 26 26 H 1.08995 * 110.34368 * 4.74381 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8823 2.3964 -1.2125 6 1 1.8823 2.3964 1.2125 7 6 2.0082 -1.2146 -0.0005 8 1 3.0882 -1.2147 -0.0001 9 6 1.3078 -2.4276 0.0048 10 7 -0.0056 -2.5706 0.0051 11 7 -0.4313 -3.7594 0.0099 12 6 0.4466 -4.7192 0.0147 13 6 0.1302 -6.1926 0.0203 14 1 1.0635 -6.7530 0.0749 15 6 -0.5836 -6.5507 -1.2840 16 6 -1.5284 -7.7544 -1.0276 17 16 -2.2409 -7.2961 0.6057 18 6 -0.7170 -6.5148 1.2618 19 16 2.0192 -4.0416 0.0051 20 1 -0.4850 0.8400 -0.0004 21 1 -1.1655 -5.6961 -1.6290 22 1 0.1524 -6.8185 -2.0420 23 1 -0.9681 -8.6872 -0.9641 24 1 -2.3036 -7.8152 -1.7914 25 1 -0.1858 -7.2086 1.9134 26 1 -0.9623 -5.5998 1.8010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260550529.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:57 Heat of formation + Delta-G solvation = 33.544876 kcal Electronic energy + Delta-G solvation = -12848.707281 eV Core-core repulsion = 10565.635618 eV Total energy + Delta-G solvation = -2283.071663 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.90446 -36.04570 -34.12305 -30.36103 -29.15494 -26.76233 -24.69524 -23.23466 -20.98996 -19.12576 -17.49872 -16.66360 -16.12226 -15.40047 -15.07878 -14.13945 -13.64813 -13.53935 -13.21869 -12.36227 -11.96910 -11.89733 -11.67809 -11.54281 -11.40536 -11.24903 -10.99648 -10.52253 -10.45061 -9.85897 -9.66800 -8.73913 -8.24466 -8.18088 -8.04854 -7.36433 -7.04315 -4.99622 2.16830 2.22738 2.63440 2.76230 2.89979 2.92139 2.96685 3.20801 3.64893 4.17230 4.84865 4.97105 5.05851 5.31543 5.38580 5.46082 5.64252 5.81700 5.97671 6.04825 6.37583 6.52272 6.58094 6.86612 7.18424 7.77931 7.87809 8.21231 9.78192 10.70881 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.055313 B = 0.006028 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.088497 B = 4643.953593 C = 4878.802186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.063 3.937 3 Si 0.929 3.071 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.363 4.363 8 H 0.100 0.900 9 C 0.177 3.823 10 N -0.340 5.340 11 N -0.215 5.215 12 C -0.149 4.149 13 C 0.024 3.976 14 H 0.076 0.924 15 C -0.113 4.113 16 C -0.065 4.065 17 S -0.308 6.308 18 C -0.046 4.046 19 S -0.114 6.114 20 H 0.290 0.710 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -6.459 -1.075 6.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.169 4.169 3 Si 0.751 3.249 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.406 4.406 8 H 0.118 0.882 9 C -0.072 4.072 10 N -0.191 5.191 11 N -0.056 5.056 12 C -0.428 4.428 13 C -0.001 4.001 14 H 0.095 0.905 15 C -0.153 4.153 16 C -0.213 4.213 17 S -0.082 6.082 18 C -0.196 4.196 19 S 0.130 5.870 20 H 0.101 0.899 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.120 0.880 25 H 0.102 0.898 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.717 -6.489 -0.591 6.555 hybrid contribution 1.554 0.859 -0.434 1.828 sum 2.271 -5.630 -1.026 6.156 Atomic orbital electron populations 1.69954 1.07613 1.30021 1.23860 1.26230 0.95231 1.01596 0.93812 0.85907 0.80597 0.79229 0.79212 1.17804 1.19132 1.19126 1.19162 0.95110 0.87849 1.38521 0.88171 1.26049 0.91296 0.93411 0.96456 1.72863 1.07330 1.07480 1.31395 1.70710 1.32492 0.95514 1.06888 1.26736 0.90658 0.98775 1.26681 1.19582 0.98165 0.89854 0.92461 0.90535 1.22462 0.98144 0.97347 0.97376 1.24299 1.00912 1.00596 0.95519 1.87592 1.24068 1.76411 1.20156 1.24038 0.93127 1.02928 0.99463 1.83780 1.14385 1.07783 1.81047 0.89900 0.89427 0.90586 0.89618 0.88033 0.89786 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.59 11.92 55.56 0.66 -16.92 15 2 C 0.06 1.48 5.50 -17.28 -0.10 1.39 15 3 Si 0.93 16.77 29.56 -169.99 -5.03 11.75 15 4 H -0.25 -4.45 7.11 56.52 0.40 -4.05 15 5 H -0.27 -4.73 7.11 56.52 0.40 -4.33 15 6 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 7 C -0.36 -9.03 9.42 -38.14 -0.36 -9.39 15 8 H 0.10 2.26 7.85 -52.49 -0.41 1.85 15 9 C 0.18 4.72 7.19 -16.75 -0.12 4.60 15 10 N -0.34 -9.73 9.94 31.56 0.31 -9.41 15 11 N -0.22 -5.69 11.26 32.68 0.37 -5.32 15 12 C -0.15 -3.39 5.62 -13.02 -0.07 -3.46 15 13 C 0.02 0.42 3.11 -91.43 -0.28 0.14 15 14 H 0.08 1.24 8.12 -51.93 -0.42 0.82 15 15 C -0.11 -1.81 5.79 -25.62 -0.15 -1.96 15 16 C -0.06 -0.88 7.52 38.30 0.29 -0.59 15 17 S -0.31 -5.12 23.23 -107.50 -2.50 -7.62 15 18 C -0.05 -0.79 6.97 37.53 0.26 -0.53 15 19 S -0.11 -2.63 23.22 -107.50 -2.50 -5.12 15 20 H 0.29 6.47 8.29 -40.82 -0.34 6.13 15 21 H 0.09 1.65 7.69 -51.93 -0.40 1.26 15 22 H 0.08 1.08 8.14 -51.93 -0.42 0.65 15 23 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.10 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.08 1.24 8.14 -51.93 -0.42 0.81 15 26 H 0.10 2.08 7.51 -51.93 -0.39 1.69 15 LS Contribution 253.62 15.07 3.82 3.82 Total: -1.00 -28.96 253.62 -7.83 -36.79 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.45 Total: 1.85 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.53 Total: -9.80 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 1.34 Total: -31.66 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -4.99 Total: -12.74 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.96 -7.83 -36.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260550529.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.332 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds