Wall clock time and date at job start Mon Mar 30 2020 04:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00003 * 2 1 4 4 C 1.46901 * 111.00031 * 236.04445 * 2 1 3 5 5 C 1.52995 * 109.47242 * 284.30226 * 4 2 1 6 6 H 1.09003 * 109.48536 * 56.31987 * 5 4 2 7 7 C 1.53056 * 109.49048 * 296.28227 * 5 4 2 8 8 N 1.46948 * 109.36315 * 181.63392 * 7 5 4 9 9 C 1.46900 * 111.00022 * 183.18778 * 8 7 5 10 10 C 1.50695 * 109.47661 * 169.99515 * 9 8 7 11 11 H 1.07999 * 119.99837 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00527 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99619 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00227 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46829 * 60.00107 * 14 12 10 16 16 H 1.48501 * 109.46809 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46943 * 300.00077 * 14 12 10 18 18 C 1.46954 * 110.88656 * 59.31389 * 8 7 5 19 19 C 1.53047 * 109.36555 * 300.68373 * 18 8 7 20 20 N 1.46948 * 109.36780 * 58.39477 * 19 18 8 21 21 C 1.46900 * 111.00387 * 176.81060 * 20 19 18 22 22 H 1.09001 * 109.47538 * 181.13328 * 1 2 3 23 23 H 1.08997 * 109.46834 * 61.13263 * 1 2 3 24 24 H 1.09006 * 109.47098 * 301.13762 * 1 2 3 25 25 H 1.09006 * 109.47017 * 56.04524 * 3 2 1 26 26 H 1.09003 * 109.47032 * 176.04581 * 3 2 1 27 27 H 1.08999 * 109.46936 * 296.04784 * 3 2 1 28 28 H 1.08997 * 109.46810 * 44.30668 * 4 2 1 29 29 H 1.09003 * 109.47048 * 164.30243 * 4 2 1 30 30 H 1.09003 * 109.48309 * 301.59672 * 7 5 4 31 31 H 1.09000 * 109.48982 * 61.66151 * 7 5 4 32 32 H 1.09004 * 109.46796 * 289.99539 * 9 8 7 33 33 H 1.09002 * 109.47212 * 49.99138 * 9 8 7 34 34 H 0.97001 * 119.99992 * 179.97438 * 13 12 10 35 35 H 1.09010 * 109.48663 * 60.64605 * 18 8 7 36 36 H 1.08997 * 109.49151 * 180.68886 * 18 8 7 37 37 H 1.09000 * 109.48798 * 178.36506 * 19 18 8 38 38 H 1.08998 * 109.48504 * 298.40639 * 19 18 8 39 39 H 1.08993 * 109.47282 * 190.51582 * 21 20 19 40 40 H 1.08995 * 109.46995 * 310.52065 * 21 20 19 41 41 H 1.09007 * 109.46594 * 70.51561 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 -1.1376 5 6 1.8456 -2.2627 -0.8577 6 1 0.8000 -2.4909 -0.6506 7 6 2.7009 -2.6440 0.3529 8 7 2.5856 -4.0888 0.5952 9 6 3.3336 -4.4824 1.7967 10 6 2.9974 -5.9074 2.1535 11 1 2.2983 -6.4651 1.5480 12 6 3.5831 -6.4996 3.2523 13 7 4.4348 -5.8206 3.9893 14 14 3.1669 -8.2663 3.6940 15 1 3.5362 -9.1586 2.5660 16 1 3.9230 -8.6640 4.9086 17 1 1.7102 -8.3802 3.9589 18 6 3.0319 -4.8540 -0.5773 19 6 2.1766 -4.4726 -1.7878 20 7 2.2919 -3.0278 -2.0302 21 6 1.5439 -2.6342 -3.2317 22 1 -0.3634 -1.0274 0.0203 23 1 -0.3633 0.4961 -0.9000 24 1 -0.3633 0.5314 0.8797 25 1 1.5898 1.9164 0.8525 26 1 3.0828 1.3432 0.0709 27 1 1.7044 1.8723 -0.9233 28 1 1.4391 -0.5072 -2.0384 29 1 3.0493 -0.5268 -1.2801 30 1 3.7426 -2.3902 0.1565 31 1 2.3527 -2.0991 1.2303 32 1 4.4029 -4.3990 1.6025 33 1 3.0625 -3.8270 2.6244 34 1 4.8465 -6.2371 4.7626 35 1 4.0775 -4.6253 -0.7842 36 1 2.9255 -5.9202 -0.3778 37 1 2.5249 -5.0175 -2.6652 38 1 1.1350 -4.7267 -1.5916 39 1 1.7940 -1.6066 -3.4950 40 1 1.8082 -3.2953 -4.0570 41 1 0.4745 -2.7089 -3.0345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260591078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:37 Heat of formation + Delta-G solvation = 23.055287 kcal Electronic energy + Delta-G solvation = -18424.540062 eV Core-core repulsion = 15760.725739 eV Total energy + Delta-G solvation = -2663.814322 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.23041 -36.91894 -34.94144 -32.39076 -31.15760 -28.70804 -27.59484 -26.81004 -25.68007 -23.22102 -23.07582 -21.64074 -20.23489 -19.06078 -16.28752 -15.91795 -15.55123 -15.31303 -14.70565 -14.45238 -14.09162 -14.02298 -13.80438 -13.30811 -13.09812 -12.60045 -12.37475 -12.14763 -11.96807 -11.70308 -11.56668 -11.50104 -11.20879 -11.06773 -10.77146 -10.53920 -10.49214 -10.24686 -10.15783 -9.62525 -9.10695 -8.37010 -8.30924 -8.04739 -7.11041 -5.95870 -3.97088 3.37393 3.41189 3.44167 3.77748 4.41240 4.47430 4.88593 5.09506 5.19163 5.20730 5.29358 5.34560 5.40251 5.49669 5.52497 5.60106 5.62126 5.74031 5.83043 5.85832 5.89230 5.92904 5.99409 6.06139 6.20135 6.32127 6.69013 6.73316 6.76184 6.99630 7.04173 7.28543 7.35019 7.45523 7.48759 7.87597 8.19355 8.31960 8.65470 9.10329 9.66633 11.14984 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027688 B = 0.005966 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.007900 B = 4691.932211 C = 5337.720141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.028 3.972 4 C 0.063 3.937 5 C 0.095 3.905 6 H 0.046 0.954 7 C 0.074 3.926 8 N -0.541 5.541 9 C 0.196 3.804 10 C -0.506 4.506 11 H 0.061 0.939 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.066 3.934 19 C 0.060 3.940 20 N -0.542 5.542 21 C 0.024 3.976 22 H 0.071 0.929 23 H 0.020 0.980 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.020 0.980 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.024 0.976 31 H 0.082 0.918 32 H -0.010 1.010 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 10.705 -11.947 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.120 4.120 4 C -0.066 4.066 5 C -0.013 4.013 6 H 0.064 0.936 7 C -0.055 4.055 8 N -0.266 5.266 9 C 0.070 3.930 10 C -0.545 4.545 11 H 0.079 0.921 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.063 4.063 19 C -0.068 4.068 20 N -0.267 5.267 21 C -0.125 4.125 22 H 0.089 0.911 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.008 0.992 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.734 10.452 -11.335 16.450 hybrid contribution -0.439 -0.519 -0.440 0.809 sum -6.172 9.933 -11.774 16.595 Atomic orbital electron populations 1.22429 0.87432 1.02437 1.00078 1.61776 1.07881 1.13491 1.43516 1.22369 1.00926 0.88699 1.00038 1.22184 1.00467 0.93360 0.90583 1.21633 0.98091 0.91250 0.90370 0.93584 1.21977 0.96786 0.90493 0.96243 1.62252 1.57790 1.02230 1.04330 1.19666 0.90799 0.96400 0.86089 1.21132 1.25108 0.97195 1.11064 0.92057 1.24987 0.95210 0.98109 0.96301 1.69957 1.29449 1.36956 1.17485 0.86576 0.78438 0.84784 0.77677 1.20323 1.21397 1.20240 1.21998 0.95680 0.99607 0.89003 1.22235 0.99285 0.86852 0.98408 1.62115 1.55646 1.05651 1.03311 1.22375 0.95517 1.01211 0.93368 0.91071 0.96146 0.91386 0.91408 0.91253 0.96113 0.94658 0.90333 0.95734 0.89933 0.99182 0.95172 0.92935 0.95411 0.89655 0.91150 0.94474 0.91795 0.91785 0.96053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.41 60.06 0.57 0.85 16 2 N -0.54 -7.08 4.38 -251.25 -1.10 -8.18 16 3 C 0.03 0.30 9.51 60.07 0.57 0.87 16 4 C 0.06 0.84 4.19 -3.83 -0.02 0.83 16 5 C 0.10 1.54 2.06 -67.66 -0.14 1.40 16 6 H 0.05 0.80 6.77 -51.93 -0.35 0.45 16 7 C 0.07 1.46 4.75 -3.77 -0.02 1.44 16 8 N -0.54 -12.32 4.70 -235.91 -1.11 -13.42 16 9 C 0.20 5.30 4.72 -4.98 -0.02 5.28 16 10 C -0.51 -14.53 8.47 -34.44 -0.29 -14.82 16 11 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 14 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 19 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 20 N -0.54 -8.43 4.78 -234.74 -1.12 -9.55 16 21 C 0.02 0.29 8.97 60.06 0.54 0.83 16 22 H 0.07 0.89 6.74 -51.93 -0.35 0.54 16 23 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 27 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.43 6.16 -51.93 -0.32 0.11 16 29 H 0.08 1.08 7.89 -51.93 -0.41 0.67 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.70 7.69 -51.93 -0.40 1.30 16 32 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 33 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 37 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.70 6.57 -51.93 -0.34 0.36 16 40 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 41 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -30.57 316.02 -9.31 -39.88 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -7.51 Total: -4.37 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 1.05 Total: 0.47 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -2.60 Total: -57.67 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.57 -9.31 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260591078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.933 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds