Wall clock time and date at job start Mon Mar 30 2020 04:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00003 * 2 1 4 4 C 1.46901 * 111.00031 * 236.04445 * 2 1 3 5 5 C 1.52995 * 109.47242 * 284.30226 * 4 2 1 6 6 H 1.09003 * 109.48536 * 56.31987 * 5 4 2 7 7 C 1.53056 * 109.49048 * 296.28227 * 5 4 2 8 8 N 1.46948 * 109.36315 * 181.63392 * 7 5 4 9 9 C 1.46900 * 111.00022 * 183.18778 * 8 7 5 10 10 C 1.50695 * 109.47661 * 169.99515 * 9 8 7 11 11 H 1.07999 * 119.99837 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00527 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99619 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00227 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46829 * 60.00107 * 14 12 10 16 16 H 1.48501 * 109.46809 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46943 * 300.00077 * 14 12 10 18 18 C 1.46954 * 110.88656 * 59.31389 * 8 7 5 19 19 C 1.53047 * 109.36555 * 300.68373 * 18 8 7 20 20 N 1.46948 * 109.36780 * 58.39477 * 19 18 8 21 21 C 1.46900 * 111.00387 * 176.81060 * 20 19 18 22 22 H 1.09001 * 109.47538 * 181.13328 * 1 2 3 23 23 H 1.08997 * 109.46834 * 61.13263 * 1 2 3 24 24 H 1.09006 * 109.47098 * 301.13762 * 1 2 3 25 25 H 1.09006 * 109.47017 * 56.04524 * 3 2 1 26 26 H 1.09003 * 109.47032 * 176.04581 * 3 2 1 27 27 H 1.08999 * 109.46936 * 296.04784 * 3 2 1 28 28 H 1.08997 * 109.46810 * 44.30668 * 4 2 1 29 29 H 1.09003 * 109.47048 * 164.30243 * 4 2 1 30 30 H 1.09003 * 109.48309 * 301.59672 * 7 5 4 31 31 H 1.09000 * 109.48982 * 61.66151 * 7 5 4 32 32 H 1.09004 * 109.46796 * 289.99539 * 9 8 7 33 33 H 1.09002 * 109.47212 * 49.99138 * 9 8 7 34 34 H 0.97001 * 119.99992 * 179.97438 * 13 12 10 35 35 H 1.09010 * 109.48663 * 60.64605 * 18 8 7 36 36 H 1.08997 * 109.49151 * 180.68886 * 18 8 7 37 37 H 1.09000 * 109.48798 * 178.36506 * 19 18 8 38 38 H 1.08998 * 109.48504 * 298.40639 * 19 18 8 39 39 H 1.08993 * 109.47282 * 190.51582 * 21 20 19 40 40 H 1.08995 * 109.46995 * 310.52065 * 21 20 19 41 41 H 1.09007 * 109.46594 * 70.51561 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 -1.1376 5 6 1.8456 -2.2627 -0.8577 6 1 0.8000 -2.4909 -0.6506 7 6 2.7009 -2.6440 0.3529 8 7 2.5856 -4.0888 0.5952 9 6 3.3336 -4.4824 1.7967 10 6 2.9974 -5.9074 2.1535 11 1 2.2983 -6.4651 1.5480 12 6 3.5831 -6.4996 3.2523 13 7 4.4348 -5.8206 3.9893 14 14 3.1669 -8.2663 3.6940 15 1 3.5362 -9.1586 2.5660 16 1 3.9230 -8.6640 4.9086 17 1 1.7102 -8.3802 3.9589 18 6 3.0319 -4.8540 -0.5773 19 6 2.1766 -4.4726 -1.7878 20 7 2.2919 -3.0278 -2.0302 21 6 1.5439 -2.6342 -3.2317 22 1 -0.3634 -1.0274 0.0203 23 1 -0.3633 0.4961 -0.9000 24 1 -0.3633 0.5314 0.8797 25 1 1.5898 1.9164 0.8525 26 1 3.0828 1.3432 0.0709 27 1 1.7044 1.8723 -0.9233 28 1 1.4391 -0.5072 -2.0384 29 1 3.0493 -0.5268 -1.2801 30 1 3.7426 -2.3902 0.1565 31 1 2.3527 -2.0991 1.2303 32 1 4.4029 -4.3990 1.6025 33 1 3.0625 -3.8270 2.6244 34 1 4.8465 -6.2371 4.7626 35 1 4.0775 -4.6253 -0.7842 36 1 2.9255 -5.9202 -0.3778 37 1 2.5249 -5.0175 -2.6652 38 1 1.1350 -4.7267 -1.5916 39 1 1.7940 -1.6066 -3.4950 40 1 1.8082 -3.2953 -4.0570 41 1 0.4745 -2.7089 -3.0345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260591078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:37 Heat of formation + Delta-G solvation = -0.489869 kcal Electronic energy + Delta-G solvation = -18425.561056 eV Core-core repulsion = 15760.725739 eV Total energy + Delta-G solvation = -2664.835317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60086 -38.09436 -36.54560 -34.52355 -32.50097 -30.39664 -28.47564 -28.34888 -27.14443 -24.89592 -24.39537 -23.15778 -21.69733 -20.51591 -18.47713 -17.21340 -16.91281 -16.48340 -16.34387 -15.86511 -15.64362 -15.18026 -15.13331 -14.81257 -14.67528 -14.07633 -13.76572 -13.38067 -13.12233 -13.05625 -12.88107 -12.67505 -12.66062 -12.57916 -12.47598 -12.35518 -12.16227 -11.81184 -11.74148 -11.44129 -11.11055 -10.60681 -9.36883 -9.18635 -9.01636 -8.19415 -6.30587 1.41341 1.45506 1.53366 2.41136 2.70581 3.12159 3.27448 3.33896 3.90003 3.95929 4.13481 4.25711 4.32258 4.38367 4.39440 4.50323 4.58677 4.62445 4.70192 4.71081 4.76879 4.79037 4.86352 5.00996 5.02365 5.03118 5.04114 5.08177 5.14623 5.23802 5.28436 5.64307 5.97325 6.01957 6.08683 6.15756 6.20001 6.38013 6.64046 6.85080 7.39147 8.91931 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027688 B = 0.005966 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.007900 B = 4691.932211 C = 5337.720141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.569 5.569 3 C 0.030 3.970 4 C 0.074 3.926 5 C 0.107 3.893 6 H 0.037 0.963 7 C 0.079 3.921 8 N -0.547 5.547 9 C 0.212 3.788 10 C -0.524 4.524 11 H 0.064 0.936 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.973 3.027 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.066 3.934 19 C 0.071 3.929 20 N -0.552 5.552 21 C 0.025 3.975 22 H 0.056 0.944 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.067 0.933 32 H -0.043 1.043 33 H 0.000 1.000 34 H 0.265 0.735 35 H 0.014 0.986 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 10.641 -13.731 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.294 5.294 3 C -0.118 4.118 4 C -0.055 4.055 5 C -0.002 4.002 6 H 0.055 0.945 7 C -0.050 4.050 8 N -0.272 5.272 9 C 0.086 3.914 10 C -0.563 4.563 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.797 3.203 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.062 4.062 19 C -0.057 4.057 20 N -0.277 5.277 21 C -0.122 4.122 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.086 0.914 32 H -0.025 1.025 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.028 10.410 -13.152 18.186 hybrid contribution -0.017 -0.435 0.119 0.452 sum -7.045 9.975 -13.032 17.860 Atomic orbital electron populations 1.22406 0.86527 1.01830 1.01325 1.61736 1.08957 1.15004 1.43711 1.22381 1.00672 0.87520 1.01236 1.22028 1.00623 0.91230 0.91595 1.21476 0.96280 0.93366 0.89120 0.94468 1.21954 0.96757 0.88419 0.97840 1.62207 1.56739 1.04295 1.03940 1.19306 0.89183 0.95703 0.87253 1.21413 1.25421 0.97858 1.11573 0.91820 1.25972 0.94731 1.03100 0.95942 1.70101 1.30387 1.39164 1.17974 0.85381 0.78505 0.78674 0.77714 1.19014 1.20764 1.19294 1.22013 0.95924 0.98502 0.89789 1.22114 0.98158 0.88164 0.97272 1.62097 1.56779 1.04744 1.04127 1.22459 0.95359 1.02542 0.91851 0.92553 0.94381 0.90642 0.90583 0.91653 0.94500 0.92499 0.90775 0.97200 0.91414 1.02527 0.98220 0.92642 0.96769 0.91171 0.88272 0.94641 0.90195 0.90062 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.41 127.69 1.20 1.78 16 2 N -0.57 -14.19 4.38 -948.83 -4.15 -18.34 16 3 C 0.03 0.58 9.51 127.69 1.21 1.79 16 4 C 0.07 1.86 4.19 86.30 0.36 2.22 16 5 C 0.11 3.37 2.06 44.92 0.09 3.46 16 6 H 0.04 1.26 6.77 -2.39 -0.02 1.24 16 7 C 0.08 3.23 4.75 86.31 0.41 3.64 16 8 N -0.55 -25.86 4.70 -900.30 -4.23 -30.09 16 9 C 0.21 12.13 4.72 85.56 0.40 12.53 16 10 C -0.52 -30.94 8.47 25.60 0.22 -30.72 16 11 H 0.06 3.65 7.13 -2.91 -0.02 3.63 16 12 C 0.00 0.03 5.46 84.66 0.46 0.49 16 13 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 14 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 C 0.07 2.76 5.43 86.31 0.47 3.23 16 19 C 0.07 2.25 5.61 86.31 0.48 2.73 16 20 N -0.55 -16.13 4.78 -896.59 -4.29 -20.41 16 21 C 0.03 0.53 8.97 127.69 1.15 1.67 16 22 H 0.06 1.36 6.74 -2.39 -0.02 1.34 16 23 H 0.04 0.67 8.13 -2.39 -0.02 0.65 16 24 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.06 1.30 8.07 -2.39 -0.02 1.28 16 27 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 1.21 6.16 -2.39 -0.01 1.19 16 29 H 0.07 1.94 7.89 -2.39 -0.02 1.92 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 2.93 7.69 -2.39 -0.02 2.91 16 32 H -0.04 -2.68 8.12 -2.39 -0.02 -2.70 16 33 H 0.00 -0.02 8.03 -2.39 -0.02 -0.04 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.07 3.09 6.79 -2.39 -0.02 3.08 16 37 H 0.10 2.60 8.07 -2.39 -0.02 2.58 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.43 6.57 -2.39 -0.02 1.41 16 40 H 0.08 1.44 8.02 -2.39 -0.02 1.42 16 41 H 0.03 0.54 8.12 -2.38 -0.02 0.52 16 Total: -1.00 -67.61 316.02 -2.94 -70.55 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.96 Total: 6.17 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.46 Total: 2.82 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -12.39 Total: -126.77 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.61 -2.94 -70.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260591078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.058 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds