Wall clock time and date at job start Mon Mar 30 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 110.99871 * 2 1 4 4 C 1.46904 * 111.00277 * 123.95654 * 2 1 3 5 5 C 1.52995 * 109.46977 * 73.42152 * 4 2 1 6 6 H 1.08999 * 109.49059 * 303.26345 * 5 4 2 7 7 C 1.53057 * 109.48833 * 63.32906 * 5 4 2 8 8 N 1.46960 * 109.36007 * 178.36701 * 7 5 4 9 9 C 1.46904 * 110.99556 * 176.81320 * 8 7 5 10 10 C 1.50698 * 109.47022 * 189.84467 * 9 8 7 11 11 H 1.08001 * 119.99962 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99823 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00342 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99859 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47145 * 270.00258 * 14 12 10 16 16 H 1.48503 * 109.46999 * 30.00426 * 14 12 10 17 17 H 1.48495 * 109.46944 * 149.99796 * 14 12 10 18 18 C 1.46961 * 110.88255 * 300.67904 * 8 7 5 19 19 C 1.53046 * 109.36048 * 59.32275 * 18 8 7 20 20 N 1.46952 * 109.48850 * 183.22231 * 5 4 2 21 21 C 1.46894 * 111.00125 * 56.84531 * 20 5 4 22 22 H 1.09002 * 109.47002 * 290.74136 * 1 2 3 23 23 H 1.08999 * 109.47425 * 50.74384 * 1 2 3 24 24 H 1.09000 * 109.47097 * 170.74438 * 1 2 3 25 25 H 1.09006 * 109.47444 * 183.95436 * 3 2 1 26 26 H 1.08995 * 109.47911 * 303.95799 * 3 2 1 27 27 H 1.09001 * 109.47276 * 63.95742 * 3 2 1 28 28 H 1.08997 * 109.46635 * 313.42160 * 4 2 1 29 29 H 1.08997 * 109.47023 * 193.42208 * 4 2 1 30 30 H 1.09004 * 109.48531 * 58.40479 * 7 5 4 31 31 H 1.08998 * 109.49072 * 298.33562 * 7 5 4 32 32 H 1.09002 * 109.46808 * 69.84366 * 9 8 7 33 33 H 1.08999 * 109.46903 * 309.84934 * 9 8 7 34 34 H 0.96999 * 120.00388 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.48661 * 179.28999 * 18 8 7 36 36 H 1.08999 * 109.48846 * 299.33513 * 18 8 7 37 37 H 1.09005 * 109.49244 * 61.57096 * 19 18 8 38 38 H 1.09007 * 109.48383 * 181.63248 * 19 18 8 39 39 H 1.09004 * 109.47435 * 178.01082 * 21 20 5 40 40 H 1.09000 * 109.47210 * 298.00706 * 21 20 5 41 41 H 1.08996 * 109.47644 * 58.00934 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.7940 -2.2611 0.8826 6 1 0.7369 -2.4610 0.7076 7 6 2.6041 -2.6833 -0.3455 8 7 2.4397 -4.1272 -0.5647 9 6 3.1424 -4.5584 -1.7805 10 6 2.7578 -5.9786 -2.1060 11 1 2.0607 -6.5078 -1.4733 12 6 3.2951 -6.6020 -3.2123 13 7 4.1435 -5.9574 -3.9831 14 14 2.8188 -8.3628 -3.6154 15 1 3.7574 -9.2960 -2.9421 16 1 1.4361 -8.6228 -3.1402 17 1 2.8842 -8.5692 -5.0845 18 6 2.8957 -4.8900 0.6058 19 6 2.0857 -4.4676 1.8337 20 7 2.2500 -3.0238 2.0530 21 6 1.5472 -2.5927 3.2687 22 1 -0.3633 0.3640 0.9611 23 1 -0.3634 0.6503 -0.7957 24 1 -0.3633 -1.0143 -0.1653 25 1 3.0827 1.3433 -0.0709 26 1 1.5897 1.9164 -0.8523 27 1 1.7043 1.8723 0.9233 28 1 1.4662 -0.4777 2.0458 29 1 3.0588 -0.5575 1.2550 30 1 3.6578 -2.4581 -0.1810 31 1 2.2479 -2.1398 -1.2206 32 1 4.2187 -4.5016 -1.6175 33 1 2.8659 -3.9077 -2.6101 34 1 4.5218 -6.3961 -4.7611 35 1 2.7522 -5.9550 0.4241 36 1 3.9528 -4.6901 0.7808 37 1 1.0319 -4.6929 1.6694 38 1 2.4419 -5.0112 2.7088 39 1 1.8780 -3.1971 4.1134 40 1 1.7691 -1.5435 3.4639 41 1 0.4732 -2.7174 3.1313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260591085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:41 Heat of formation + Delta-G solvation = 23.416239 kcal Electronic energy + Delta-G solvation = -18430.029071 eV Core-core repulsion = 15766.230401 eV Total energy + Delta-G solvation = -2663.798670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.23717 -36.91934 -34.94268 -32.39330 -31.15556 -28.70979 -27.58893 -26.81599 -25.68796 -23.22278 -23.07855 -21.64277 -20.23129 -19.05588 -16.29432 -15.92576 -15.55687 -15.31841 -14.70566 -14.44900 -14.10102 -14.00057 -13.79976 -13.30907 -13.09873 -12.62452 -12.39419 -12.15563 -11.95178 -11.68741 -11.57600 -11.49889 -11.19398 -11.08123 -10.74397 -10.55967 -10.49276 -10.25094 -10.14912 -9.62720 -9.09239 -8.37813 -8.31001 -8.04798 -7.11179 -5.96179 -3.97342 3.35460 3.41438 3.45840 3.77896 4.40976 4.47303 4.88316 5.08156 5.18756 5.21304 5.30042 5.34104 5.40033 5.50491 5.53012 5.59470 5.61225 5.73991 5.82833 5.85539 5.90673 5.94046 5.99277 6.05770 6.20095 6.32144 6.69099 6.73214 6.76068 6.99587 7.04019 7.28401 7.34789 7.45426 7.48643 7.87623 8.19019 8.31747 8.65245 9.10397 9.66501 11.14711 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027732 B = 0.005972 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.427632 B = 4687.315587 C = 5332.992025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.028 3.972 4 C 0.063 3.937 5 C 0.095 3.905 6 H 0.046 0.954 7 C 0.074 3.926 8 N -0.541 5.541 9 C 0.195 3.805 10 C -0.506 4.506 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.896 3.104 15 H -0.282 1.282 16 H -0.274 1.274 17 H -0.287 1.287 18 C 0.066 3.934 19 C 0.060 3.940 20 N -0.542 5.542 21 C 0.023 3.977 22 H 0.020 0.980 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.020 0.980 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.025 0.975 31 H 0.082 0.918 32 H -0.010 1.010 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.085 0.915 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 11.042 11.943 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.121 4.121 4 C -0.066 4.066 5 C -0.014 4.014 6 H 0.064 0.936 7 C -0.055 4.055 8 N -0.266 5.266 9 C 0.070 3.930 10 C -0.544 4.544 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.724 3.276 15 H -0.208 1.208 16 H -0.198 1.198 17 H -0.213 1.213 18 C -0.063 4.063 19 C -0.068 4.068 20 N -0.267 5.267 21 C -0.126 4.126 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.008 0.992 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.152 10.784 11.330 16.468 hybrid contribution -0.454 -0.520 0.455 0.827 sum -5.605 10.264 11.785 16.603 Atomic orbital electron populations 1.22435 0.87411 1.02851 0.99713 1.61785 1.07909 1.13448 1.43507 1.22369 1.00926 0.88727 1.00030 1.22210 1.00550 0.93301 0.90522 1.21625 0.98030 0.91239 0.90503 0.93594 1.21977 0.96932 0.90450 0.96137 1.62266 1.58573 1.01713 1.04054 1.19673 0.91320 0.96146 0.85855 1.21171 1.25716 0.97569 1.09973 0.91999 1.24986 0.95240 0.98173 0.96220 1.69962 1.30654 1.37088 1.16128 0.86524 0.78880 0.84786 0.77369 1.20784 1.19839 1.21302 1.21997 0.95873 0.99472 0.88948 1.22235 0.99207 0.86876 0.98458 1.62114 1.56792 1.05027 1.02772 1.22387 0.95920 1.01035 0.93219 0.96102 0.91503 0.90931 0.91278 0.91402 0.96132 0.94684 0.90291 0.95705 0.89937 0.99178 0.95160 0.92990 0.89652 0.95399 0.94465 0.91148 0.91742 0.91734 0.96088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.38 60.06 0.56 0.84 16 2 N -0.54 -7.08 4.38 -251.27 -1.10 -8.18 16 3 C 0.03 0.29 9.52 60.06 0.57 0.86 16 4 C 0.06 0.84 4.16 -3.82 -0.02 0.83 16 5 C 0.09 1.53 2.04 -67.66 -0.14 1.39 16 6 H 0.05 0.79 6.82 -51.93 -0.35 0.44 16 7 C 0.07 1.46 4.74 -3.76 -0.02 1.44 16 8 N -0.54 -12.31 4.70 -235.90 -1.11 -13.42 16 9 C 0.20 5.28 4.72 -4.97 -0.02 5.26 16 10 C -0.51 -14.50 8.47 -34.44 -0.29 -14.79 16 11 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 14 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 19 C 0.06 1.00 5.62 -3.77 -0.02 0.98 16 20 N -0.54 -8.43 4.78 -234.73 -1.12 -9.55 16 21 C 0.02 0.28 9.08 60.06 0.55 0.82 16 22 H 0.02 0.22 7.99 -51.93 -0.42 -0.20 16 23 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 24 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 25 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 26 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.43 6.01 -51.93 -0.31 0.12 16 29 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.69 7.68 -51.93 -0.40 1.29 16 32 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 33 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.09 1.84 6.78 -51.93 -0.35 1.49 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 39 H 0.06 0.71 8.10 -51.93 -0.42 0.28 16 40 H 0.06 0.71 6.29 -51.93 -0.33 0.38 16 41 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -30.59 315.72 -9.29 -39.88 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -7.49 Total: -4.36 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 1.05 Total: 0.46 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -2.60 Total: -57.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.59 -9.29 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260591085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.293 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds