Wall clock time and date at job start Mon Mar 30 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 110.99871 * 2 1 4 4 C 1.46904 * 111.00277 * 123.95654 * 2 1 3 5 5 C 1.52995 * 109.46977 * 73.42152 * 4 2 1 6 6 H 1.08999 * 109.49059 * 303.26345 * 5 4 2 7 7 C 1.53057 * 109.48833 * 63.32906 * 5 4 2 8 8 N 1.46960 * 109.36007 * 178.36701 * 7 5 4 9 9 C 1.46904 * 110.99556 * 176.81320 * 8 7 5 10 10 C 1.50698 * 109.47022 * 189.84467 * 9 8 7 11 11 H 1.08001 * 119.99962 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99823 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00342 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99859 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47145 * 270.00258 * 14 12 10 16 16 H 1.48503 * 109.46999 * 30.00426 * 14 12 10 17 17 H 1.48495 * 109.46944 * 149.99796 * 14 12 10 18 18 C 1.46961 * 110.88255 * 300.67904 * 8 7 5 19 19 C 1.53046 * 109.36048 * 59.32275 * 18 8 7 20 20 N 1.46952 * 109.48850 * 183.22231 * 5 4 2 21 21 C 1.46894 * 111.00125 * 56.84531 * 20 5 4 22 22 H 1.09002 * 109.47002 * 290.74136 * 1 2 3 23 23 H 1.08999 * 109.47425 * 50.74384 * 1 2 3 24 24 H 1.09000 * 109.47097 * 170.74438 * 1 2 3 25 25 H 1.09006 * 109.47444 * 183.95436 * 3 2 1 26 26 H 1.08995 * 109.47911 * 303.95799 * 3 2 1 27 27 H 1.09001 * 109.47276 * 63.95742 * 3 2 1 28 28 H 1.08997 * 109.46635 * 313.42160 * 4 2 1 29 29 H 1.08997 * 109.47023 * 193.42208 * 4 2 1 30 30 H 1.09004 * 109.48531 * 58.40479 * 7 5 4 31 31 H 1.08998 * 109.49072 * 298.33562 * 7 5 4 32 32 H 1.09002 * 109.46808 * 69.84366 * 9 8 7 33 33 H 1.08999 * 109.46903 * 309.84934 * 9 8 7 34 34 H 0.96999 * 120.00388 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.48661 * 179.28999 * 18 8 7 36 36 H 1.08999 * 109.48846 * 299.33513 * 18 8 7 37 37 H 1.09005 * 109.49244 * 61.57096 * 19 18 8 38 38 H 1.09007 * 109.48383 * 181.63248 * 19 18 8 39 39 H 1.09004 * 109.47435 * 178.01082 * 21 20 5 40 40 H 1.09000 * 109.47210 * 298.00706 * 21 20 5 41 41 H 1.08996 * 109.47644 * 58.00934 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.7940 -2.2611 0.8826 6 1 0.7369 -2.4610 0.7076 7 6 2.6041 -2.6833 -0.3455 8 7 2.4397 -4.1272 -0.5647 9 6 3.1424 -4.5584 -1.7805 10 6 2.7578 -5.9786 -2.1060 11 1 2.0607 -6.5078 -1.4733 12 6 3.2951 -6.6020 -3.2123 13 7 4.1435 -5.9574 -3.9831 14 14 2.8188 -8.3628 -3.6154 15 1 3.7574 -9.2960 -2.9421 16 1 1.4361 -8.6228 -3.1402 17 1 2.8842 -8.5692 -5.0845 18 6 2.8957 -4.8900 0.6058 19 6 2.0857 -4.4676 1.8337 20 7 2.2500 -3.0238 2.0530 21 6 1.5472 -2.5927 3.2687 22 1 -0.3633 0.3640 0.9611 23 1 -0.3634 0.6503 -0.7957 24 1 -0.3633 -1.0143 -0.1653 25 1 3.0827 1.3433 -0.0709 26 1 1.5897 1.9164 -0.8523 27 1 1.7043 1.8723 0.9233 28 1 1.4662 -0.4777 2.0458 29 1 3.0588 -0.5575 1.2550 30 1 3.6578 -2.4581 -0.1810 31 1 2.2479 -2.1398 -1.2206 32 1 4.2187 -4.5016 -1.6175 33 1 2.8659 -3.9077 -2.6101 34 1 4.5218 -6.3961 -4.7611 35 1 2.7522 -5.9550 0.4241 36 1 3.9528 -4.6901 0.7808 37 1 1.0319 -4.6929 1.6694 38 1 2.4419 -5.0112 2.7088 39 1 1.8780 -3.1971 4.1134 40 1 1.7691 -1.5435 3.4639 41 1 0.4732 -2.7174 3.1313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260591085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:41 Heat of formation + Delta-G solvation = -0.157988 kcal Electronic energy + Delta-G solvation = -18431.051327 eV Core-core repulsion = 15766.230401 eV Total energy + Delta-G solvation = -2664.820925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.185 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.60671 -38.09682 -36.54668 -34.52586 -32.49829 -30.39891 -28.47145 -28.35178 -27.15558 -24.89729 -24.39742 -23.16119 -21.69564 -20.50980 -18.48126 -17.22069 -16.92048 -16.48796 -16.34229 -15.86643 -15.64807 -15.17626 -15.12294 -14.81247 -14.67435 -14.08568 -13.78767 -13.39271 -13.14000 -13.04170 -12.87923 -12.68057 -12.65472 -12.55766 -12.47419 -12.36855 -12.16361 -11.80772 -11.73333 -11.43726 -11.09888 -10.61659 -9.37357 -9.18447 -9.01756 -8.19694 -6.30774 1.41258 1.43453 1.55075 2.40935 2.70650 3.12002 3.27135 3.33780 3.89558 3.95587 4.12977 4.26765 4.31058 4.38217 4.39513 4.50579 4.58890 4.62661 4.70143 4.70521 4.76035 4.78970 4.86899 5.01137 5.02634 5.03500 5.04354 5.07872 5.14603 5.23808 5.28421 5.64388 5.97314 6.01753 6.08326 6.15633 6.19837 6.37851 6.63896 6.85174 7.39057 8.91871 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027732 B = 0.005972 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.427632 B = 4687.315587 C = 5332.992025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.569 5.569 3 C 0.029 3.971 4 C 0.074 3.926 5 C 0.106 3.894 6 H 0.037 0.963 7 C 0.079 3.921 8 N -0.547 5.547 9 C 0.212 3.788 10 C -0.523 4.523 11 H 0.064 0.936 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.264 1.264 17 H -0.281 1.281 18 C 0.066 3.934 19 C 0.071 3.929 20 N -0.552 5.552 21 C 0.025 3.975 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.068 0.932 32 H -0.043 1.043 33 H 0.000 1.000 34 H 0.265 0.735 35 H 0.070 0.930 36 H 0.014 0.986 37 H 0.035 0.965 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 11.063 13.750 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.294 5.294 3 C -0.118 4.118 4 C -0.055 4.055 5 C -0.003 4.003 6 H 0.055 0.945 7 C -0.050 4.050 8 N -0.272 5.272 9 C 0.085 3.915 10 C -0.562 4.562 11 H 0.082 0.918 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.797 3.203 15 H -0.196 1.196 16 H -0.188 1.188 17 H -0.207 1.207 18 C -0.062 4.062 19 C -0.057 4.057 20 N -0.277 5.277 21 C -0.123 4.123 22 H 0.055 0.945 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.028 0.972 31 H 0.086 0.914 32 H -0.025 1.025 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.377 10.829 13.168 18.203 hybrid contribution -0.049 -0.465 -0.112 0.481 sum -6.426 10.364 13.056 17.865 Atomic orbital electron populations 1.22406 0.86563 1.02119 1.01021 1.61741 1.08935 1.15006 1.43702 1.22382 1.00710 0.87495 1.01236 1.22057 1.00645 0.91194 0.91584 1.21467 0.96368 0.93291 0.89172 0.94469 1.21953 0.96743 0.88419 0.97841 1.62219 1.57692 1.03721 1.03556 1.19313 0.89569 0.95505 0.87092 1.21440 1.26011 0.98244 1.10465 0.91822 1.25967 0.94860 1.03112 0.95812 1.70102 1.31626 1.39263 1.16644 0.85328 0.78996 0.78669 0.77281 1.19636 1.18826 1.20685 1.22012 0.95946 0.98470 0.89804 1.22112 0.98202 0.88155 0.97234 1.62098 1.57799 1.04164 1.03670 1.22471 0.95872 1.02277 0.91670 0.94468 0.90452 0.92699 0.91611 0.90556 0.94524 0.92511 0.90736 0.97188 0.91407 1.02521 0.98198 0.92645 0.91146 0.96750 0.94652 0.88277 0.90012 0.90148 0.95567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.38 127.69 1.20 1.78 16 2 N -0.57 -14.18 4.38 -948.87 -4.15 -18.33 16 3 C 0.03 0.57 9.52 127.69 1.22 1.78 16 4 C 0.07 1.86 4.16 86.30 0.36 2.22 16 5 C 0.11 3.35 2.04 44.92 0.09 3.44 16 6 H 0.04 1.26 6.82 -2.39 -0.02 1.24 16 7 C 0.08 3.23 4.74 86.31 0.41 3.64 16 8 N -0.55 -25.85 4.70 -900.25 -4.23 -30.09 16 9 C 0.21 12.10 4.72 85.56 0.40 12.51 16 10 C -0.52 -30.87 8.47 25.60 0.22 -30.65 16 11 H 0.06 3.66 7.12 -2.91 -0.02 3.63 16 12 C 0.00 0.02 5.46 84.66 0.46 0.48 16 13 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 14 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 C 0.07 2.76 5.43 86.31 0.47 3.23 16 19 C 0.07 2.25 5.62 86.31 0.48 2.74 16 20 N -0.55 -16.14 4.78 -896.57 -4.29 -20.43 16 21 C 0.02 0.51 9.08 127.69 1.16 1.67 16 22 H 0.04 0.67 7.99 -2.39 -0.02 0.65 16 23 H 0.08 1.47 8.03 -2.39 -0.02 1.45 16 24 H 0.05 1.36 6.91 -2.39 -0.02 1.34 16 25 H 0.07 1.29 8.08 -2.38 -0.02 1.27 16 26 H 0.08 1.32 8.06 -2.39 -0.02 1.30 16 27 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 1.20 6.01 -2.39 -0.01 1.19 16 29 H 0.07 1.95 7.93 -2.39 -0.02 1.93 16 30 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.07 2.93 7.68 -2.39 -0.02 2.91 16 32 H -0.04 -2.68 8.12 -2.39 -0.02 -2.70 16 33 H 0.00 -0.01 8.03 -2.39 -0.02 -0.03 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.07 3.10 6.78 -2.39 -0.02 3.09 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.10 2.60 8.11 -2.38 -0.02 2.58 16 39 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 40 H 0.08 1.44 6.29 -2.39 -0.02 1.43 16 41 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -67.65 315.72 -2.93 -70.58 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.96 Total: 6.08 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.47 Total: 2.83 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -12.39 Total: -126.74 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.65 -2.93 -70.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260591085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.422 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds