Wall clock time and date at job start Mon Mar 30 2020 05:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46833 * 180.02562 * 9 7 2 11 11 S 1.75056 * 124.79571 * 269.69745 * 10 9 7 12 12 C 1.75054 * 90.88955 * 179.97438 * 11 10 9 13 13 C 1.36089 * 110.39623 * 0.34469 * 12 11 10 14 14 C 1.36081 * 124.80587 * 90.00016 * 10 9 7 15 15 C 1.53601 * 130.57778 * 359.97438 * 14 10 9 16 16 S 1.82954 * 103.55863 * 161.93943 * 15 14 10 17 17 O 1.42095 * 109.46904 * 137.04522 * 16 15 14 18 18 C 1.53594 * 130.57350 * 179.73731 * 13 12 11 19 19 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 20 20 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 21 21 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 22 22 H 1.07996 * 124.80445 * 180.08173 * 12 11 10 23 23 H 1.08997 * 110.60680 * 280.46294 * 15 14 10 24 24 H 1.09007 * 110.60177 * 43.42667 * 15 14 10 25 25 H 1.08996 * 110.60975 * 316.58515 * 18 13 12 26 26 H 1.08999 * 110.60549 * 79.39390 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2301 -3.6446 -0.0171 11 16 2.8746 -4.4020 -1.4578 12 6 3.8224 -5.5071 -0.4858 13 6 3.6145 -5.2721 0.8384 14 6 2.7340 -4.2403 1.0978 15 6 2.4814 -3.9524 2.5853 16 16 3.0541 -5.4762 3.4204 17 8 3.8002 -5.1295 4.5789 18 6 4.1980 -5.9637 2.0795 19 1 -0.4850 0.8401 0.0040 20 1 0.6240 -2.5614 0.8771 21 1 0.6246 -2.5525 -0.9029 22 1 4.4762 -6.2705 -0.8810 23 1 3.0647 -3.0924 2.9140 24 1 1.4193 -3.7901 2.7696 25 1 4.2006 -7.0459 1.9500 26 1 5.2053 -5.6005 2.2830 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260680659.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:40 Heat of formation + Delta-G solvation = -14.135521 kcal Electronic energy + Delta-G solvation = -12840.835406 eV Core-core repulsion = 10523.403415 eV Total energy + Delta-G solvation = -2317.431992 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.018 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.07227 -35.50340 -33.52157 -31.12179 -29.51272 -28.12963 -25.40408 -23.05707 -20.59877 -17.91489 -17.43463 -16.50350 -16.31492 -15.03942 -14.89761 -14.38127 -14.09702 -13.81471 -12.88798 -12.58240 -12.54090 -12.25619 -12.04239 -11.48891 -11.32706 -11.12875 -10.76564 -10.62467 -10.23929 -9.89641 -9.84245 -9.58304 -8.51904 -8.36783 -7.76633 -7.68038 -6.14417 -4.19281 1.51650 1.96574 2.22646 2.28749 2.68176 3.09978 3.26826 3.30970 3.35168 3.92755 4.36400 5.02666 5.20542 5.31663 5.39061 5.49553 5.72168 5.78157 6.20322 6.28443 6.37071 6.77138 6.96887 7.34490 7.48342 7.79971 8.15536 8.83905 9.45180 10.94846 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.024488 B = 0.008079 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.128646 B = 3465.102385 C = 4189.252312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.078 3.922 10 C -0.093 4.093 11 S 0.133 5.867 12 C -0.257 4.257 13 C -0.084 4.084 14 C -0.148 4.148 15 C -0.338 4.338 16 S 1.224 4.776 17 O -0.864 6.864 18 C -0.361 4.361 19 H 0.265 0.735 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.153 0.847 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 -13.139 0.863 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.039 3.961 10 C -0.212 4.212 11 S 0.401 5.599 12 C -0.393 4.393 13 C -0.099 4.099 14 C -0.158 4.158 15 C -0.478 4.478 16 S 1.424 4.576 17 O -0.860 6.860 18 C -0.500 4.500 19 H 0.074 0.926 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.171 0.829 23 H 0.119 0.881 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.027 -13.273 0.254 13.430 hybrid contribution 2.388 2.294 0.854 3.420 sum 4.415 -10.979 1.107 11.885 Atomic orbital electron populations 1.69927 1.05976 1.27188 1.49944 1.24970 0.94912 0.99220 0.94891 0.86581 0.79590 0.82653 0.78835 1.21043 1.20155 1.20049 1.20974 0.93035 0.89550 1.51859 0.92515 1.17992 0.91482 0.87783 0.98859 1.25561 1.02224 1.00368 0.93035 1.83859 1.39452 1.26795 1.09817 1.25316 1.10397 1.07879 0.95744 1.19532 0.99445 0.98111 0.92797 1.19306 1.03243 0.99816 0.93476 1.26733 1.09098 1.13813 0.98156 1.70609 1.04203 1.01464 0.81321 1.93086 1.72720 1.82976 1.37197 1.26944 1.10374 1.06139 1.06591 0.92583 0.93808 0.94936 0.82890 0.88066 0.85620 0.86119 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.83 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.52 -14.13 9.09 -34.44 -0.31 -14.44 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.08 1.91 5.37 -29.03 -0.16 1.75 15 10 C -0.09 -1.92 5.72 -35.08 -0.20 -2.12 15 11 S 0.13 2.32 23.26 -107.50 -2.50 -0.18 15 12 C -0.26 -3.96 11.24 29.96 0.34 -3.62 15 13 C -0.08 -1.35 6.09 -103.99 -0.63 -1.98 15 14 C -0.15 -2.72 6.02 -103.99 -0.63 -3.35 15 15 C -0.34 -5.60 7.24 37.47 0.27 -5.33 15 16 S 1.22 15.54 14.80 -107.50 -1.59 13.95 15 17 O -0.86 -16.17 18.15 -35.23 -0.64 -16.81 15 18 C -0.36 -4.64 7.40 37.47 0.28 -4.36 15 19 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 20 H 0.04 1.11 8.06 -51.93 -0.42 0.69 15 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.15 1.91 8.06 -52.49 -0.42 1.49 15 23 H 0.10 1.92 8.14 -51.93 -0.42 1.50 15 24 H 0.13 1.91 8.11 -51.92 -0.42 1.49 15 25 H 0.12 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.10 1.38 8.14 -51.93 -0.42 0.95 15 LS Contribution 256.84 15.07 3.87 3.87 Total: -1.00 -33.95 256.84 -8.78 -42.73 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -2.49 Total: -3.31 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: -1.14 Total: -31.82 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.74 Total: -24.83 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.64 Total: -16.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 17.86 SS G_CDS: -4.09 Total: 13.77 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.95 -8.78 -42.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260680659.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.592 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds