Wall clock time and date at job start Mon Mar 30 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99879 * 2 1 4 4 H 1.48507 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47572 * 300.00679 * 3 2 1 6 6 H 1.48507 * 109.47173 * 60.00663 * 3 2 1 7 7 C 1.37874 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00307 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47119 * 180.02562 * 9 7 2 11 11 S 1.75045 * 124.79958 * 269.95673 * 10 9 7 12 12 C 1.75047 * 90.89269 * 180.02562 * 11 10 9 13 13 C 1.36085 * 110.39825 * 0.02562 * 12 11 10 14 14 C 1.36085 * 124.79913 * 90.00546 * 10 9 7 15 15 C 1.53593 * 130.58059 * 359.97438 * 14 10 9 16 16 S 1.82958 * 103.69715 * 197.96453 * 15 14 10 17 17 O 1.42097 * 109.47085 * 223.03664 * 16 15 14 18 18 C 1.53592 * 130.57914 * 179.97438 * 13 12 11 19 19 H 0.96996 * 120.00193 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47130 * 60.00238 * 9 7 2 21 21 H 1.09000 * 109.47084 * 299.99768 * 9 7 2 22 22 H 1.07994 * 124.80292 * 179.97438 * 12 11 10 23 23 H 1.09002 * 110.60747 * 316.56408 * 15 14 10 24 24 H 1.09002 * 110.60245 * 79.37004 * 15 14 10 25 25 H 1.09000 * 110.60604 * 280.47982 * 18 13 12 26 26 H 1.09000 * 110.60644 * 43.28722 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2123 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 16 2.8788 -4.4045 -1.4379 12 6 3.8229 -5.5088 -0.4614 13 6 3.6165 -5.2670 0.8618 14 6 2.7351 -4.2349 1.1169 15 6 2.4834 -3.9400 2.6031 16 16 3.8921 -4.7446 3.4490 17 8 3.4239 -5.4268 4.6043 18 6 4.2016 -5.9520 2.1057 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 4.4761 -6.2742 -0.8535 23 1 2.4882 -2.8656 2.7872 24 1 1.5398 -4.3793 2.9269 25 1 3.6824 -6.8890 2.3076 26 1 5.2703 -6.1262 1.9808 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260680660.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:42 Heat of formation + Delta-G solvation = -36.445184 kcal Electronic energy + Delta-G solvation = -12847.314214 eV Core-core repulsion = 10528.914803 eV Total energy + Delta-G solvation = -2318.399411 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.018 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43059 -36.87269 -35.46265 -32.79809 -30.84623 -29.56751 -27.01941 -24.79996 -22.05023 -19.22637 -18.73485 -18.47391 -17.72640 -16.65112 -16.13672 -15.92386 -15.36609 -15.13747 -14.44587 -14.19307 -14.07169 -13.76219 -13.34182 -13.23758 -12.91347 -12.53656 -12.47218 -12.29546 -11.82168 -11.57636 -11.48653 -11.18481 -10.60576 -9.59551 -9.17118 -9.07029 -8.18779 -6.33459 0.13548 0.80204 0.86474 1.03133 1.42070 1.44220 1.45458 1.58547 1.74555 2.43590 2.74349 3.12904 3.84627 4.00881 4.18674 4.36842 4.43402 4.68121 4.80138 4.85096 4.96176 5.24961 5.29594 5.57605 5.67627 5.73699 6.12752 6.78675 7.36081 8.90253 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.008275 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.957920 B = 3382.852211 C = 4132.125566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.088 3.912 10 C -0.153 4.153 11 S 0.142 5.858 12 C -0.227 4.227 13 C -0.098 4.098 14 C -0.139 4.139 15 C -0.363 4.363 16 S 1.311 4.689 17 O -0.915 6.915 18 C -0.352 4.352 19 H 0.265 0.735 20 H 0.001 0.999 21 H 0.009 0.991 22 H 0.196 0.804 23 H 0.126 0.874 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.516 -8.434 0.859 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.049 3.951 10 C -0.272 4.272 11 S 0.410 5.590 12 C -0.363 4.363 13 C -0.112 4.112 14 C -0.151 4.151 15 C -0.501 4.501 16 S 1.511 4.489 17 O -0.911 6.911 18 C -0.492 4.492 19 H 0.074 0.926 20 H 0.019 0.981 21 H 0.027 0.973 22 H 0.213 0.787 23 H 0.144 0.856 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.656 -7.954 0.257 14.950 hybrid contribution -2.108 -0.480 0.809 2.308 sum 10.548 -8.435 1.066 13.548 Atomic orbital electron populations 1.70095 1.07944 1.27959 1.51415 1.25949 0.95661 1.03257 0.94484 0.85371 0.79499 0.78439 0.77665 1.17804 1.20716 1.20412 1.21399 0.93515 0.90289 1.50796 0.91513 1.17588 0.91828 0.89881 0.95778 1.25189 1.04256 1.01893 0.95839 1.83718 1.39679 1.26969 1.08678 1.25805 1.08787 1.06695 0.95015 1.19708 0.99846 0.97372 0.94225 1.19669 1.02235 0.99712 0.93475 1.26997 1.13816 1.10950 0.98367 1.70438 1.01735 0.97637 0.79071 1.92951 1.81732 1.75499 1.40924 1.27000 1.08983 1.09324 1.03894 0.92639 0.98108 0.97301 0.78740 0.85602 0.90434 0.88417 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.91 15 2 C 0.00 0.25 5.46 84.65 0.46 0.71 15 3 Si 0.97 42.27 29.54 68.60 2.03 44.30 15 4 H -0.25 -10.42 7.11 99.48 0.71 -9.71 15 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 7 C -0.52 -28.25 9.09 25.60 0.23 -28.02 15 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 15 9 C 0.09 4.60 5.37 29.10 0.16 4.75 15 10 C -0.15 -6.48 5.72 25.19 0.14 -6.34 15 11 S 0.14 4.78 23.26 -56.49 -1.31 3.46 15 12 C -0.23 -6.07 11.24 67.32 0.76 -5.31 15 13 C -0.10 -2.81 6.09 -19.45 -0.12 -2.93 15 14 C -0.14 -5.06 6.02 -19.45 -0.12 -5.18 15 15 C -0.36 -12.19 7.23 72.18 0.52 -11.67 15 16 S 1.31 31.33 14.82 -56.49 -0.84 30.49 15 17 O -0.92 -32.57 18.15 -148.98 -2.70 -35.28 15 18 C -0.35 -7.47 7.41 72.18 0.54 -6.94 15 19 H 0.26 14.69 8.31 -92.71 -0.77 13.92 15 20 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 21 H 0.01 0.50 8.09 -2.39 -0.02 0.48 15 22 H 0.20 3.62 8.06 -2.91 -0.02 3.60 15 23 H 0.13 4.34 8.14 -2.39 -0.02 4.32 15 24 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.10 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.17 2.09 8.14 -2.39 -0.02 2.07 15 Total: -1.00 -73.54 256.93 1.22 -72.32 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.19 Total: 0.52 kcal Atomic # 6 Polarization: -63.48 SS G_CDS: 2.57 Total: -60.91 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.28 Total: -54.91 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -2.70 Total: -35.28 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 36.11 SS G_CDS: -2.15 Total: 33.95 kcal Total: -73.54 1.22 -72.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260680660.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.879 kcal (2) G-P(sol) polarization free energy of solvation -73.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds