Wall clock time and date at job start Mon Mar 30 2020 05:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76195 * 100.00411 * 2 1 4 4 N 1.32961 * 118.85001 * 0.02562 * 3 2 1 5 5 C 1.31838 * 121.23750 * 179.74542 * 4 3 2 6 6 C 1.41000 * 118.95635 * 0.48442 * 5 4 3 7 7 C 1.40888 * 121.02149 * 179.78443 * 6 5 4 8 8 H 1.07996 * 120.00279 * 208.19736 * 7 6 5 9 9 C 1.39842 * 119.99654 * 28.20016 * 7 6 5 10 10 N 1.30967 * 119.99764 * 197.31796 * 9 7 6 11 11 Si 1.86799 * 119.99957 * 17.31609 * 9 7 6 12 12 H 1.48502 * 109.46945 * 269.99834 * 11 9 7 13 13 H 1.48495 * 109.47338 * 30.00041 * 11 9 7 14 14 H 1.48500 * 109.47264 * 150.00034 * 11 9 7 15 15 C 1.42286 * 117.96180 * 359.51042 * 6 5 4 16 16 S 1.76203 * 120.66271 * 180.22853 * 15 6 5 17 17 C 1.80997 * 99.99859 * 180.02562 * 16 15 6 18 18 N 1.32609 * 118.85744 * 180.02562 * 3 2 1 19 19 H 1.09006 * 109.47129 * 299.99922 * 1 2 3 20 20 H 1.09006 * 109.47224 * 59.99846 * 1 2 3 21 21 H 1.08994 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.07995 * 120.52219 * 180.24745 * 5 4 3 23 23 H 0.96998 * 119.99931 * 355.45360 * 10 9 7 24 24 H 1.09005 * 109.47219 * 300.00002 * 17 16 15 25 25 H 1.09000 * 109.47396 * 60.00179 * 17 16 15 26 26 H 1.09000 * 109.47362 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 7 1.0806 2.5693 0.0005 5 6 1.2554 3.8760 0.0056 6 6 2.5687 4.3891 0.0000 7 6 2.8056 5.7780 0.0005 8 1 3.7068 6.1722 -0.4451 9 6 1.8737 6.6460 0.5782 10 7 1.9055 7.9241 0.2941 11 14 0.5836 5.9824 1.7549 12 1 -0.6277 5.5892 0.9910 13 1 1.1258 4.7977 2.4672 14 1 0.2268 7.0330 2.7420 15 6 3.6475 3.4614 -0.0001 16 16 5.3171 4.0246 -0.0008 17 6 6.1846 2.4360 -0.0014 18 7 3.3710 2.1637 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 0.4060 4.5429 0.0099 23 1 2.6147 8.2793 -0.2642 24 1 5.9081 1.8707 0.8887 25 1 5.9074 1.8710 -0.8913 26 1 7.2606 2.6097 -0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260720009.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:37 Heat of formation + Delta-G solvation = 19.927364 kcal Electronic energy + Delta-G solvation = -13008.438231 eV Core-core repulsion = 10724.776068 eV Total energy + Delta-G solvation = -2283.662163 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23568 -34.54289 -32.61930 -31.30319 -28.48414 -28.40089 -25.89844 -23.66443 -21.90707 -18.88992 -18.07058 -16.58115 -15.46334 -14.82648 -14.31418 -13.95212 -13.85767 -13.38158 -13.31435 -13.09437 -12.77518 -12.66708 -12.10790 -11.69835 -11.18524 -10.75056 -10.47341 -10.16719 -10.07996 -9.96246 -9.72679 -9.46803 -8.91691 -8.23849 -7.76436 -7.23605 -7.01185 -4.85746 2.00616 2.15777 2.16492 2.44017 2.90144 2.95261 3.07510 3.11163 3.29838 3.69049 4.21363 4.99364 5.40481 5.54187 5.61250 5.63225 5.70381 5.93847 6.14364 6.21396 6.28928 6.61355 6.95274 7.08962 7.61054 7.81413 8.01121 8.29297 9.06155 9.55604 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.011681 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.685870 B = 2396.446201 C = 3650.378836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.070 6.070 3 C 0.152 3.848 4 N -0.480 5.480 5 C 0.018 3.982 6 C 0.018 3.982 7 C -0.453 4.453 8 H 0.096 0.904 9 C 0.042 3.958 10 N -0.779 5.779 11 Si 1.064 2.936 12 H -0.267 1.267 13 H -0.263 1.263 14 H -0.277 1.277 15 C 0.051 3.949 16 S -0.067 6.067 17 C -0.139 4.139 18 N -0.462 5.462 19 H 0.081 0.919 20 H 0.081 0.919 21 H 0.090 0.910 22 H 0.152 0.848 23 H 0.295 0.705 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -6.390 0.681 6.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.159 5.841 3 C -0.221 4.221 4 N -0.195 5.195 5 C -0.158 4.158 6 C 0.006 3.994 7 C -0.483 4.483 8 H 0.114 0.886 9 C -0.182 4.182 10 N -0.399 5.399 11 Si 0.889 3.111 12 H -0.194 1.194 13 H -0.188 1.188 14 H -0.203 1.203 15 C -0.214 4.214 16 S 0.168 5.832 17 C -0.308 4.308 18 N -0.180 5.180 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.109 0.891 22 H 0.169 0.831 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.129 -6.785 1.528 6.956 hybrid contribution 0.168 0.519 -1.104 1.231 sum 0.297 -6.266 0.424 6.287 Atomic orbital electron populations 1.23255 0.95271 1.04543 1.06427 1.84842 1.05899 0.98477 1.94879 1.23130 0.86694 0.97443 1.14836 1.67891 1.34587 1.04942 1.12121 1.22917 0.95679 0.90540 1.06660 1.18900 0.92011 0.94921 0.93614 1.20657 1.07165 0.90632 1.29842 0.88621 1.27441 0.99687 0.93867 0.97251 1.70562 1.28466 1.14586 1.26271 0.83706 0.75101 0.76208 0.76094 1.19351 1.18803 1.20327 1.23114 0.96884 0.90874 1.10517 1.85304 0.94957 1.09926 1.93042 1.23310 1.01745 0.99681 1.06045 1.67909 1.21667 1.15391 1.13008 0.90006 0.89996 0.89149 0.83117 0.89315 0.90208 0.90316 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.60 101.05 0.97 -0.95 15 2 S -0.07 -1.33 22.88 -107.50 -2.46 -3.79 15 3 C 0.15 3.58 7.86 -90.44 -0.71 2.87 15 4 N -0.48 -11.46 9.06 -12.82 -0.12 -11.58 15 5 C 0.02 0.43 8.55 -16.50 -0.14 0.29 15 6 C 0.02 0.46 5.19 -106.29 -0.55 -0.10 15 7 C -0.45 -11.25 8.87 -37.98 -0.34 -11.58 15 8 H 0.10 2.43 7.38 -52.49 -0.39 2.04 15 9 C 0.04 0.99 5.44 -17.32 -0.09 0.90 15 10 N -0.78 -18.81 13.66 55.54 0.76 -18.05 15 11 Si 1.06 22.44 24.89 -169.99 -4.23 18.21 15 12 H -0.27 -5.29 6.43 56.52 0.36 -4.92 15 13 H -0.26 -5.81 7.00 56.52 0.40 -5.41 15 14 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 15 C 0.05 1.24 7.08 -15.63 -0.11 1.13 15 16 S -0.07 -1.38 21.45 -107.50 -2.31 -3.68 15 17 C -0.14 -2.34 9.69 101.05 0.98 -1.36 15 18 N -0.46 -11.18 9.25 -11.52 -0.11 -11.28 15 19 H 0.08 1.30 8.10 -51.91 -0.42 0.88 15 20 H 0.08 1.30 8.10 -51.91 -0.42 0.88 15 21 H 0.09 1.08 8.14 -51.92 -0.42 0.66 15 22 H 0.15 3.46 4.38 -52.49 -0.23 3.23 15 23 H 0.29 6.88 8.73 -40.82 -0.36 6.52 15 24 H 0.08 1.38 8.14 -51.91 -0.42 0.96 15 25 H 0.08 1.36 8.14 -51.92 -0.42 0.94 15 26 H 0.09 1.19 8.14 -51.92 -0.42 0.77 15 LS Contribution 253.26 15.07 3.82 3.82 Total: -1.00 -26.85 253.26 -6.98 -33.83 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.34 Total: 1.34 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.00 Total: -8.81 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.54 Total: -40.91 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.23 Total: 18.21 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -4.77 Total: -7.48 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.85 -6.98 -33.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720009.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.762 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds