Wall clock time and date at job start Mon Mar 30 2020 05:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76195 * 100.00411 * 2 1 4 4 N 1.32961 * 118.85001 * 0.02562 * 3 2 1 5 5 C 1.31838 * 121.23750 * 179.74542 * 4 3 2 6 6 C 1.41000 * 118.95635 * 0.48442 * 5 4 3 7 7 C 1.40888 * 121.02149 * 179.78443 * 6 5 4 8 8 H 1.07996 * 120.00279 * 208.19736 * 7 6 5 9 9 C 1.39842 * 119.99654 * 28.20016 * 7 6 5 10 10 N 1.30967 * 119.99764 * 197.31796 * 9 7 6 11 11 Si 1.86799 * 119.99957 * 17.31609 * 9 7 6 12 12 H 1.48502 * 109.46945 * 269.99834 * 11 9 7 13 13 H 1.48495 * 109.47338 * 30.00041 * 11 9 7 14 14 H 1.48500 * 109.47264 * 150.00034 * 11 9 7 15 15 C 1.42286 * 117.96180 * 359.51042 * 6 5 4 16 16 S 1.76203 * 120.66271 * 180.22853 * 15 6 5 17 17 C 1.80997 * 99.99859 * 180.02562 * 16 15 6 18 18 N 1.32609 * 118.85744 * 180.02562 * 3 2 1 19 19 H 1.09006 * 109.47129 * 299.99922 * 1 2 3 20 20 H 1.09006 * 109.47224 * 59.99846 * 1 2 3 21 21 H 1.08994 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.07995 * 120.52219 * 180.24745 * 5 4 3 23 23 H 0.96998 * 119.99931 * 355.45360 * 10 9 7 24 24 H 1.09005 * 109.47219 * 300.00002 * 17 16 15 25 25 H 1.09000 * 109.47396 * 60.00179 * 17 16 15 26 26 H 1.09000 * 109.47362 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 7 1.0806 2.5693 0.0005 5 6 1.2554 3.8760 0.0056 6 6 2.5687 4.3891 0.0000 7 6 2.8056 5.7780 0.0005 8 1 3.7068 6.1722 -0.4451 9 6 1.8737 6.6460 0.5782 10 7 1.9055 7.9241 0.2941 11 14 0.5836 5.9824 1.7549 12 1 -0.6277 5.5892 0.9910 13 1 1.1258 4.7977 2.4672 14 1 0.2268 7.0330 2.7420 15 6 3.6475 3.4614 -0.0001 16 16 5.3171 4.0246 -0.0008 17 6 6.1846 2.4360 -0.0014 18 7 3.3710 2.1637 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 0.4060 4.5429 0.0099 23 1 2.6147 8.2793 -0.2642 24 1 5.9081 1.8707 0.8887 25 1 5.9074 1.8710 -0.8913 26 1 7.2606 2.6097 -0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260720009.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:37 Heat of formation + Delta-G solvation = 3.648161 kcal Electronic energy + Delta-G solvation = -13009.144150 eV Core-core repulsion = 10724.776068 eV Total energy + Delta-G solvation = -2284.368082 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06319 -36.37221 -34.44023 -33.13637 -29.81400 -29.74996 -27.70181 -25.48960 -23.73836 -20.71274 -19.80248 -18.39923 -17.06081 -16.52553 -16.10557 -15.64991 -15.53953 -15.10158 -14.79561 -14.48595 -14.40699 -14.12250 -13.40614 -13.17810 -12.91412 -12.53812 -12.18383 -11.90658 -11.74030 -11.55010 -11.46881 -11.18457 -10.69916 -10.08525 -9.61012 -8.80759 -8.71803 -6.70075 0.15410 0.28423 0.58044 0.81480 1.26015 1.41581 1.45499 1.50654 1.63835 1.98104 2.38635 3.12649 3.63070 4.08598 4.29418 4.32683 4.38555 4.39714 4.43139 4.75140 4.91451 4.98554 5.11382 5.22927 5.75357 5.89832 6.16985 6.44031 7.20734 7.70998 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.011681 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.685870 B = 2396.446201 C = 3650.378836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.056 6.056 3 C 0.138 3.862 4 N -0.485 5.485 5 C 0.007 3.993 6 C -0.003 4.003 7 C -0.471 4.471 8 H 0.080 0.920 9 C 0.022 3.978 10 N -0.793 5.793 11 Si 1.089 2.911 12 H -0.246 1.246 13 H -0.281 1.281 14 H -0.261 1.261 15 C 0.034 3.966 16 S -0.074 6.074 17 C -0.125 4.125 18 N -0.473 5.473 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.132 0.868 22 H 0.162 0.838 23 H 0.292 0.708 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 -7.981 0.952 8.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S 0.173 5.827 3 C -0.235 4.235 4 N -0.201 5.201 5 C -0.167 4.167 6 C -0.015 4.015 7 C -0.501 4.501 8 H 0.098 0.902 9 C -0.199 4.199 10 N -0.414 5.414 11 Si 0.910 3.090 12 H -0.171 1.171 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.230 4.230 16 S 0.161 5.839 17 C -0.294 4.294 18 N -0.191 5.191 19 H 0.096 0.904 20 H 0.096 0.904 21 H 0.150 0.850 22 H 0.178 0.822 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.293 -8.349 1.782 8.542 hybrid contribution 0.372 0.820 -1.214 1.512 sum 0.079 -7.528 0.568 7.550 Atomic orbital electron populations 1.23388 0.92251 1.07126 1.06038 1.84772 1.09172 0.94560 1.94243 1.24185 0.86680 0.99917 1.12717 1.67989 1.34626 1.04748 1.12725 1.23144 0.95872 0.91138 1.06582 1.19113 0.92833 0.95222 0.94336 1.20572 1.07281 0.90922 1.31308 0.90202 1.28172 1.00528 0.93659 0.97515 1.70594 1.28860 1.14818 1.27101 0.83378 0.74589 0.75558 0.75437 1.17097 1.20688 1.18657 1.23655 0.98728 0.91124 1.09503 1.85270 0.93415 1.12764 1.92489 1.23368 1.03342 0.97051 1.05646 1.68076 1.22032 1.15186 1.13849 0.90363 0.90352 0.84996 0.82154 0.89610 0.90546 0.90626 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 9.60 113.37 1.09 -2.19 15 2 S -0.06 -2.01 22.88 -56.49 -1.29 -3.30 15 3 C 0.14 6.35 7.86 180.29 1.42 7.76 15 4 N -0.48 -22.70 9.06 -194.48 -1.76 -24.46 15 5 C 0.01 0.35 8.55 85.37 0.73 1.08 15 6 C 0.00 -0.13 5.19 -20.95 -0.11 -0.24 15 7 C -0.47 -23.84 8.87 23.31 0.21 -23.63 15 8 H 0.08 4.20 7.38 -2.91 -0.02 4.17 15 9 C 0.02 1.06 5.44 85.21 0.46 1.52 15 10 N -0.79 -38.60 13.66 21.82 0.30 -38.30 15 11 Si 1.09 44.73 24.89 68.60 1.71 46.44 15 12 H -0.25 -9.18 6.43 99.48 0.64 -8.54 15 13 H -0.28 -12.31 7.00 99.48 0.70 -11.61 15 14 H -0.26 -9.99 7.11 99.48 0.71 -9.29 15 15 C 0.03 1.65 7.08 85.57 0.61 2.25 15 16 S -0.07 -3.01 21.45 -56.49 -1.21 -4.22 15 17 C -0.13 -3.97 9.69 113.37 1.10 -2.87 15 18 N -0.47 -22.56 9.25 -190.35 -1.76 -24.32 15 19 H 0.08 2.26 8.10 -2.39 -0.02 2.24 15 20 H 0.08 2.27 8.10 -2.39 -0.02 2.25 15 21 H 0.13 2.56 8.14 -2.40 -0.02 2.54 15 22 H 0.16 7.25 4.38 -2.91 -0.01 7.24 15 23 H 0.29 13.92 8.73 -92.71 -0.81 13.11 15 24 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.13 3.02 8.14 -2.40 -0.02 3.01 15 Total: -1.00 -56.99 253.26 2.56 -54.43 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.08 Total: 10.05 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 5.50 Total: -16.32 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -3.22 Total: -87.08 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.71 Total: 46.44 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.50 Total: -7.53 kcal Total: -56.99 2.56 -54.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260720009.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.077 kcal (2) G-P(sol) polarization free energy of solvation -56.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds