Wall clock time and date at job start Mon Mar 30 2020 05:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76204 * 99.99722 * 2 1 4 4 C 1.39647 * 120.41817 * 179.97438 * 3 2 1 5 5 C 1.40516 * 118.22095 * 179.97438 * 4 3 2 6 6 C 1.41560 * 120.57294 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00436 * 0.02562 * 6 5 4 8 8 C 1.40064 * 119.99589 * 179.72103 * 6 5 4 9 9 N 1.30694 * 120.00305 * 0.27955 * 8 6 5 10 10 Si 1.86803 * 119.99770 * 180.27384 * 8 6 5 11 11 H 1.48508 * 109.46742 * 90.00449 * 10 8 6 12 12 H 1.48501 * 109.47216 * 210.00306 * 10 8 6 13 13 H 1.48499 * 109.47135 * 330.00647 * 10 8 6 14 14 N 1.34214 * 118.84775 * 0.25244 * 5 4 3 15 15 C 1.32135 * 120.71621 * 359.48304 * 14 5 4 16 16 S 1.76206 * 119.01831 * 180.26405 * 15 14 5 17 17 C 1.80995 * 100.00144 * 180.25797 * 16 15 14 18 18 N 1.32747 * 121.96621 * 0.53549 * 15 14 5 19 19 H 1.09004 * 109.46911 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47049 * 299.99925 * 1 2 3 21 21 H 1.08997 * 109.47429 * 60.00226 * 1 2 3 22 22 H 1.08000 * 120.88693 * 359.97438 * 4 3 2 23 23 H 0.96996 * 120.00343 * 179.97438 * 9 8 6 24 24 H 1.08994 * 109.47433 * 300.00595 * 17 16 15 25 25 H 1.09002 * 109.46925 * 60.00849 * 17 16 15 26 26 H 1.09002 * 109.47305 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4246 2.2225 0.0005 5 6 3.6153 3.6147 0.0000 6 6 4.9206 4.1627 0.0010 7 1 5.7806 3.5093 0.0019 8 6 5.0967 5.5522 -0.0055 9 7 4.0560 6.3428 -0.0070 10 14 6.8191 6.2753 -0.0118 11 1 7.2728 6.4607 -1.4137 12 1 6.8074 7.5879 0.6825 13 1 7.7461 5.3519 0.6905 14 7 2.5385 4.4158 0.0041 15 6 1.3189 3.9073 -0.0016 16 16 -0.0630 5.0005 -0.0029 17 6 -1.4154 3.7976 -0.0032 18 7 1.1037 2.5974 -0.0010 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 4.2676 1.5474 0.0014 23 1 4.1780 7.3051 -0.0111 24 1 -1.3448 3.1718 -0.8927 25 1 -1.3460 3.1727 0.8872 26 1 -2.3699 4.3240 -0.0045 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260745530.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:39 Heat of formation + Delta-G solvation = 12.543565 kcal Electronic energy + Delta-G solvation = -12916.132369 eV Core-core repulsion = 10632.150020 eV Total energy + Delta-G solvation = -2283.982348 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62913 -36.05813 -33.50214 -32.55780 -29.87588 -29.71412 -28.32335 -24.86318 -24.12348 -20.33718 -18.80968 -17.38068 -16.99310 -16.74777 -15.99099 -15.63430 -15.42210 -14.74668 -14.58089 -14.36477 -14.16345 -13.55565 -13.42295 -13.04973 -12.80162 -12.70827 -11.95093 -11.82166 -11.76921 -11.53426 -11.34731 -11.00971 -10.47245 -9.58108 -8.85709 -8.46392 -8.39012 -6.86561 0.47743 0.58400 0.72109 0.74870 1.32569 1.39517 1.50900 1.55853 1.60838 2.16995 2.67705 3.63404 4.14129 4.32275 4.38219 4.42152 4.43590 4.56561 4.67696 4.89594 5.00524 5.04921 5.08288 5.44773 5.95370 6.38160 6.64241 6.69972 7.83820 8.26889 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.008770 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.811823 B = 3191.826219 C = 4302.184326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.091 6.091 3 C 0.155 3.845 4 C -0.322 4.322 5 C 0.246 3.754 6 C -0.434 4.434 7 H 0.102 0.898 8 C 0.022 3.978 9 N -0.738 5.738 10 Si 0.998 3.002 11 H -0.260 1.260 12 H -0.265 1.265 13 H -0.251 1.251 14 N -0.527 5.527 15 C 0.290 3.710 16 S -0.057 6.057 17 C -0.118 4.118 18 N -0.615 5.615 19 H 0.128 0.872 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.121 0.879 23 H 0.287 0.713 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -4.772 -0.013 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S 0.144 5.856 3 C -0.097 4.097 4 C -0.357 4.357 5 C 0.115 3.885 6 C -0.467 4.467 7 H 0.120 0.880 8 C -0.203 4.203 9 N -0.359 5.359 10 Si 0.816 3.184 11 H -0.184 1.184 12 H -0.190 1.190 13 H -0.174 1.174 14 N -0.251 5.251 15 C -0.093 4.093 16 S 0.174 5.826 17 C -0.287 4.287 18 N -0.346 5.346 19 H 0.146 0.854 20 H 0.097 0.903 21 H 0.097 0.903 22 H 0.139 0.861 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.775 -3.780 -0.004 6.902 hybrid contribution 0.761 -0.462 -0.017 0.891 sum -5.013 -4.242 -0.021 6.567 Atomic orbital electron populations 1.23318 0.92032 1.06949 1.05998 1.85139 1.10190 0.97681 1.92544 1.23097 0.92129 0.98647 0.95802 1.22140 0.96145 0.96837 1.20603 1.19162 0.93315 0.88164 0.87876 1.20157 0.91521 0.93381 1.41689 0.87962 1.27184 1.03692 0.97140 0.92235 1.70174 1.33740 1.05656 1.26350 0.84976 0.75503 0.78142 0.79751 1.18419 1.18979 1.17415 1.69483 0.96556 1.37430 1.21604 1.24984 0.97362 0.91389 0.95528 1.85293 0.94297 1.10415 1.92594 1.23381 0.97961 1.01400 1.05969 1.68739 1.33050 1.02000 1.30801 0.85388 0.90300 0.90288 0.86051 0.90218 0.90238 0.90240 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.10 9.68 113.37 1.10 -2.00 15 2 S -0.09 -3.25 22.73 -56.49 -1.28 -4.53 15 3 C 0.15 7.30 7.01 84.86 0.59 7.90 15 4 C -0.32 -16.63 9.72 23.17 0.23 -16.40 15 5 C 0.25 13.98 6.58 40.15 0.26 14.25 15 6 C -0.43 -23.24 9.19 23.53 0.22 -23.03 15 7 H 0.10 5.02 7.85 -2.91 -0.02 5.00 15 8 C 0.02 1.10 5.50 85.31 0.47 1.57 15 9 N -0.74 -39.43 11.52 21.84 0.25 -39.17 15 10 Si 1.00 36.67 29.56 68.60 2.03 38.69 15 11 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 12 H -0.27 -9.32 7.11 99.48 0.71 -8.61 15 13 H -0.25 -8.80 7.11 99.48 0.71 -8.09 15 14 N -0.53 -30.45 7.99 -190.15 -1.52 -31.97 15 15 C 0.29 14.94 7.85 180.49 1.42 16.36 15 16 S -0.06 -2.34 22.89 -56.49 -1.29 -3.64 15 17 C -0.12 -3.47 9.61 113.37 1.09 -2.38 15 18 N -0.61 -29.09 7.95 -192.79 -1.53 -30.62 15 19 H 0.13 2.48 8.14 -2.39 -0.02 2.46 15 20 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 21 H 0.08 2.23 8.13 -2.40 -0.02 2.22 15 22 H 0.12 5.82 8.06 -2.91 -0.02 5.80 15 23 H 0.29 13.73 8.29 -92.71 -0.77 12.96 15 24 H 0.08 2.37 8.11 -2.40 -0.02 2.35 15 25 H 0.08 2.37 8.11 -2.39 -0.02 2.35 15 26 H 0.13 2.78 8.14 -2.39 -0.02 2.76 15 Total: -1.00 -65.27 262.04 3.21 -62.06 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.19 Total: 12.92 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.37 Total: -3.75 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -2.80 Total: -101.76 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -2.58 Total: -8.17 kcal Total: -65.27 3.21 -62.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260745530.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.604 kcal (2) G-P(sol) polarization free energy of solvation -65.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds