Wall clock time and date at job start Mon Mar 30 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47263 * 299.99587 * 3 2 1 6 6 H 1.48499 * 109.47393 * 59.99834 * 3 2 1 7 7 C 1.37883 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00293 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99572 * 0.02562 * 7 2 1 10 10 S 1.81396 * 109.47211 * 180.02562 * 9 7 2 11 11 O 1.42104 * 110.54130 * 68.37133 * 10 9 7 12 12 O 1.42101 * 110.54011 * 291.62763 * 10 9 7 13 13 C 1.76202 * 104.45307 * 179.97438 * 10 9 7 14 14 C 1.38163 * 120.02748 * 115.02258 * 13 10 9 15 15 C 1.38243 * 120.05438 * 179.97438 * 14 13 10 16 16 C 1.38289 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05159 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.02753 * 295.00117 * 13 10 9 19 19 O 1.35899 * 120.05461 * 359.97438 * 18 13 10 20 20 H 0.97006 * 120.00242 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47664 * 59.99790 * 9 7 2 22 22 H 1.09007 * 109.47349 * 299.99804 * 9 7 2 23 23 H 1.08001 * 119.97024 * 359.97438 * 14 13 10 24 24 H 1.08004 * 119.94070 * 180.02562 * 15 14 13 25 25 H 1.07993 * 119.96940 * 180.28495 * 16 15 14 26 26 H 1.08000 * 120.02364 * 180.02562 * 17 16 15 27 27 H 0.96699 * 114.00749 * 270.02413 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0021 11 8 3.1255 -3.9377 1.2396 12 8 3.1274 -3.9388 -1.2344 13 6 1.4185 -5.3210 0.0027 14 6 1.4365 -6.1783 -1.0806 15 6 0.6438 -7.3109 -1.0805 16 6 -0.1686 -7.5890 0.0035 17 6 -0.1902 -6.7350 1.0889 18 6 0.6040 -5.5973 1.0909 19 8 0.5852 -4.7560 2.1580 20 1 -0.4851 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.0705 -5.9635 -1.9282 24 1 0.6597 -7.9801 -1.9281 25 1 -0.7835 -8.4768 0.0031 26 1 -0.8245 -6.9528 1.9354 27 1 1.2354 -4.9717 2.8406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260748446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:35 Heat of formation + Delta-G solvation = -93.068804 kcal Electronic energy + Delta-G solvation = -15293.902233 eV Core-core repulsion = 12530.294566 eV Total energy + Delta-G solvation = -2763.607667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.57693 -36.80051 -35.87280 -34.98591 -33.32228 -31.13618 -29.69458 -28.98085 -23.73724 -22.85499 -22.53083 -18.80427 -17.97132 -17.14051 -16.44739 -15.93496 -15.35717 -15.32246 -14.54348 -14.44887 -14.11798 -13.83315 -12.57084 -12.42886 -12.30882 -12.05479 -11.75865 -11.39560 -11.14594 -11.07764 -11.00869 -10.90015 -10.59739 -10.07454 -9.73445 -9.38605 -8.99287 -8.69179 -8.67671 -6.30214 -4.41240 0.88050 1.22576 1.30183 3.22131 3.29012 3.35971 3.49782 3.88433 4.23154 4.27338 4.67188 4.90233 4.93146 5.04757 5.17258 5.33759 5.59709 5.71695 5.93109 6.19252 6.22106 6.36478 6.75315 6.78861 6.88067 7.46359 7.72060 7.77442 8.60720 9.25805 10.81384 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.037744 B = 0.007559 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.661188 B = 3703.271107 C = 3898.968680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.072 0.928 9 C -0.389 4.389 10 S 2.470 3.530 11 O -0.962 6.962 12 O -0.965 6.965 13 C -0.681 4.681 14 C -0.012 4.012 15 C -0.157 4.157 16 C -0.064 4.064 17 C -0.171 4.171 18 C 0.203 3.797 19 O -0.493 6.493 20 H 0.268 0.732 21 H 0.086 0.914 22 H 0.099 0.901 23 H 0.147 0.853 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -12.553 0.951 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.090 0.910 9 C -0.525 4.525 10 S 2.653 3.347 11 O -0.959 6.959 12 O -0.962 6.962 13 C -0.764 4.764 14 C -0.031 4.031 15 C -0.175 4.175 16 C -0.082 4.082 17 C -0.190 4.190 18 C 0.157 3.843 19 O -0.306 6.306 20 H 0.078 0.922 21 H 0.104 0.896 22 H 0.117 0.883 23 H 0.164 0.836 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.128 -12.271 0.665 12.341 hybrid contribution -0.299 0.330 0.276 0.524 sum -1.427 -11.941 0.941 12.063 Atomic orbital electron populations 1.69974 1.06265 1.27590 1.47508 1.24921 0.95000 0.99517 0.93508 0.86303 0.80390 0.82116 0.78048 1.18946 1.20347 1.20329 1.20400 0.92852 0.88556 1.55649 0.91037 1.27422 1.09411 1.08101 1.07535 1.06579 0.77773 0.76217 0.74120 1.93419 1.71307 1.86587 1.44619 1.93428 1.71323 1.86612 1.44830 1.31519 1.18362 1.24091 1.02431 1.20975 0.94773 0.91547 0.95807 1.21271 0.98542 0.98480 0.99249 1.21240 0.96286 0.98067 0.92590 1.21479 1.02240 0.94726 1.00547 1.17938 0.91465 0.87841 0.87020 1.84797 1.62108 1.52903 1.30806 0.92231 0.89629 0.88281 0.83566 0.85203 0.85306 0.84833 0.73314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 13.29 55.43 0.74 -24.37 15 2 C 0.08 2.14 5.46 -17.82 -0.10 2.04 15 3 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.54 -14.92 9.13 -34.44 -0.31 -15.23 15 8 H 0.07 1.95 7.71 -52.49 -0.40 1.54 15 9 C -0.39 -9.69 5.67 36.01 0.20 -9.49 15 10 S 2.47 54.19 4.66 -107.50 -0.50 53.69 15 11 O -0.96 -22.35 17.16 -62.73 -1.08 -23.43 15 12 O -0.96 -22.80 16.74 -57.54 -0.96 -23.76 15 13 C -0.68 -12.49 5.59 -39.44 -0.22 -12.71 15 14 C -0.01 -0.20 9.50 -39.61 -0.38 -0.58 15 15 C -0.16 -2.01 10.04 -39.56 -0.40 -2.40 15 16 C -0.06 -0.76 10.04 -39.60 -0.40 -1.15 15 17 C -0.17 -2.31 9.99 -39.43 -0.39 -2.71 15 18 C 0.20 3.40 6.63 -39.22 -0.26 3.14 15 19 O -0.49 -8.15 11.51 -29.23 -0.34 -8.49 15 20 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.09 2.13 8.14 -51.92 -0.42 1.71 15 22 H 0.10 2.49 7.39 -51.92 -0.38 2.11 15 23 H 0.15 2.24 7.21 -52.49 -0.38 1.86 15 24 H 0.13 1.24 8.06 -52.48 -0.42 0.81 15 25 H 0.13 1.07 8.06 -52.49 -0.42 0.64 15 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.41 5.13 8.99 45.56 0.41 5.54 15 LS Contribution 258.21 15.07 3.89 3.89 Total: -1.00 -33.85 258.21 -7.11 -40.96 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -1.58 Total: 4.59 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: -2.25 Total: -39.10 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.74 Total: -24.37 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -2.38 Total: -55.68 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 54.19 SS G_CDS: -0.50 Total: 53.69 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.85 -7.11 -40.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.109 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds