Wall clock time and date at job start Mon Mar 30 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47208 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47263 * 299.99587 * 3 2 1 6 6 H 1.48499 * 109.47393 * 59.99834 * 3 2 1 7 7 C 1.37883 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00293 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99572 * 0.02562 * 7 2 1 10 10 S 1.81396 * 109.47211 * 180.02562 * 9 7 2 11 11 O 1.42104 * 110.54130 * 68.37133 * 10 9 7 12 12 O 1.42101 * 110.54011 * 291.62763 * 10 9 7 13 13 C 1.76202 * 104.45307 * 179.97438 * 10 9 7 14 14 C 1.38163 * 120.02748 * 115.02258 * 13 10 9 15 15 C 1.38243 * 120.05438 * 179.97438 * 14 13 10 16 16 C 1.38289 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05159 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.02753 * 295.00117 * 13 10 9 19 19 O 1.35899 * 120.05461 * 359.97438 * 18 13 10 20 20 H 0.97006 * 120.00242 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47664 * 59.99790 * 9 7 2 22 22 H 1.09007 * 109.47349 * 299.99804 * 9 7 2 23 23 H 1.08001 * 119.97024 * 359.97438 * 14 13 10 24 24 H 1.08004 * 119.94070 * 180.02562 * 15 14 13 25 25 H 1.07993 * 119.96940 * 180.28495 * 16 15 14 26 26 H 1.08000 * 120.02364 * 180.02562 * 17 16 15 27 27 H 0.96699 * 114.00749 * 270.02413 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0021 11 8 3.1255 -3.9377 1.2396 12 8 3.1274 -3.9388 -1.2344 13 6 1.4185 -5.3210 0.0027 14 6 1.4365 -6.1783 -1.0806 15 6 0.6438 -7.3109 -1.0805 16 6 -0.1686 -7.5890 0.0035 17 6 -0.1902 -6.7350 1.0889 18 6 0.6040 -5.5973 1.0909 19 8 0.5852 -4.7560 2.1580 20 1 -0.4851 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.0705 -5.9635 -1.9282 24 1 0.6597 -7.9801 -1.9281 25 1 -0.7835 -8.4768 0.0031 26 1 -0.8245 -6.9528 1.9354 27 1 1.2354 -4.9717 2.8406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260748446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:35 Heat of formation + Delta-G solvation = -119.513746 kcal Electronic energy + Delta-G solvation = -15295.048971 eV Core-core repulsion = 12530.294566 eV Total energy + Delta-G solvation = -2764.754405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74253 -38.22695 -37.45993 -36.82418 -35.41447 -32.29308 -31.08638 -30.78035 -25.66947 -24.19435 -23.68142 -20.23721 -19.45067 -18.96790 -18.09601 -17.38435 -17.15867 -16.57252 -16.21613 -15.98266 -15.60941 -14.98251 -14.47730 -14.06649 -13.63829 -13.47384 -13.39528 -13.00031 -12.94214 -12.86123 -12.72764 -12.55042 -12.31824 -11.79131 -11.42511 -11.04448 -10.78821 -10.36155 -9.80103 -8.41018 -6.60334 -0.63939 -0.19158 0.20107 1.38349 1.38791 1.53730 2.20238 2.33247 2.41349 2.92291 2.99732 3.10993 3.42952 3.87242 4.05135 4.29059 4.39273 4.59597 4.74823 4.81681 4.88737 5.09408 5.18824 5.31793 5.32365 5.70690 5.77443 6.50103 6.61298 7.11213 8.72135 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.037744 B = 0.007559 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.661188 B = 3703.271107 C = 3898.968680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.405 4.405 10 S 2.499 3.501 11 O -0.982 6.982 12 O -0.988 6.988 13 C -0.703 4.703 14 C -0.033 4.033 15 C -0.148 4.148 16 C -0.045 4.045 17 C -0.169 4.169 18 C 0.182 3.818 19 O -0.510 6.510 20 H 0.274 0.726 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.144 0.856 24 H 0.171 0.829 25 H 0.180 0.820 26 H 0.163 0.837 27 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 -14.489 0.823 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.606 4.606 8 H 0.085 0.915 9 C -0.539 4.539 10 S 2.686 3.314 11 O -0.979 6.979 12 O -0.985 6.985 13 C -0.792 4.792 14 C -0.052 4.052 15 C -0.166 4.166 16 C -0.062 4.062 17 C -0.188 4.188 18 C 0.136 3.864 19 O -0.326 6.326 20 H 0.083 0.917 21 H 0.092 0.908 22 H 0.105 0.895 23 H 0.162 0.838 24 H 0.188 0.812 25 H 0.197 0.803 26 H 0.181 0.819 27 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -1.856 -14.143 0.543 14.274 hybrid contribution -0.156 0.727 0.314 0.807 sum -2.012 -13.415 0.857 13.592 Atomic orbital electron populations 1.70057 1.07688 1.28884 1.48026 1.25881 0.95955 1.03227 0.92749 0.85354 0.79129 0.77659 0.78865 1.18520 1.19047 1.19044 1.20822 0.93108 0.90496 1.56196 0.91473 1.27465 1.10250 1.09883 1.06312 1.05047 0.77022 0.76179 0.73134 1.93378 1.72056 1.87145 1.45336 1.93385 1.72159 1.87246 1.45754 1.30821 1.20318 1.23002 1.05069 1.21196 0.96059 0.92783 0.95132 1.21743 0.96801 0.97255 1.00810 1.21871 0.94990 0.98589 0.90773 1.21870 1.01306 0.93365 1.02257 1.18272 0.92363 0.89236 0.86552 1.84766 1.62669 1.53819 1.31305 0.91655 0.90756 0.89454 0.83797 0.81202 0.80315 0.81920 0.71977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.38 13.29 21.45 0.28 -53.10 15 2 C 0.02 1.41 5.46 84.66 0.46 1.88 15 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 15 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 15 7 C -0.57 -32.91 9.13 25.60 0.23 -32.67 15 8 H 0.07 3.81 7.71 -2.91 -0.02 3.79 15 9 C -0.41 -21.30 5.67 71.24 0.40 -20.89 15 10 S 2.50 113.94 4.66 -56.49 -0.26 113.68 15 11 O -0.98 -47.21 17.16 -122.69 -2.11 -49.32 15 12 O -0.99 -48.34 16.74 -127.65 -2.14 -50.47 15 13 C -0.70 -25.82 5.59 22.36 0.13 -25.69 15 14 C -0.03 -1.01 9.50 22.25 0.21 -0.80 15 15 C -0.15 -3.17 10.04 22.28 0.22 -2.95 15 16 C -0.04 -0.83 10.04 22.25 0.22 -0.60 15 17 C -0.17 -3.99 9.99 22.36 0.22 -3.77 15 18 C 0.18 5.92 6.63 22.50 0.15 6.07 15 19 O -0.51 -17.09 11.51 -83.03 -0.96 -18.05 15 20 H 0.27 14.81 8.31 -92.70 -0.77 14.04 15 21 H 0.07 3.95 8.14 -2.39 -0.02 3.93 15 22 H 0.09 4.68 7.39 -2.39 -0.02 4.67 15 23 H 0.14 4.37 7.21 -2.91 -0.02 4.34 15 24 H 0.17 2.28 8.06 -2.91 -0.02 2.26 15 25 H 0.18 1.62 8.06 -2.91 -0.02 1.60 15 26 H 0.16 2.85 8.06 -2.91 -0.02 2.83 15 27 H 0.42 10.81 8.99 -74.06 -0.67 10.14 15 Total: -1.00 -75.22 258.21 -0.36 -75.59 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.53 Total: 15.58 kcal Atomic # 6 Polarization: -81.69 SS G_CDS: 2.26 Total: -79.43 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.28 Total: -53.10 kcal Atomic # 8 Polarization: -112.64 SS G_CDS: -5.20 Total: -117.84 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 113.94 SS G_CDS: -0.26 Total: 113.68 kcal Total: -75.22 -0.36 -75.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.928 kcal (2) G-P(sol) polarization free energy of solvation -75.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds