Wall clock time and date at job start Mon Mar 30 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38324 * 120.36644 * 2 1 4 4 C 1.40908 * 118.17399 * 180.25860 * 3 2 1 5 5 C 1.41553 * 120.65238 * 179.76230 * 4 3 2 6 6 H 1.08002 * 119.99827 * 359.71210 * 5 4 3 7 7 C 1.40105 * 119.99660 * 179.97438 * 5 4 3 8 8 N 1.30674 * 120.00513 * 359.71951 * 7 5 4 9 9 Si 1.86801 * 119.99777 * 179.72043 * 7 5 4 10 10 H 1.48496 * 109.47377 * 60.00075 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99688 * 9 7 5 13 13 N 1.34052 * 118.69279 * 359.47996 * 4 3 2 14 14 C 1.31479 * 120.56568 * 0.25884 * 13 4 3 15 15 Br 1.89106 * 118.98961 * 179.97438 * 14 13 4 16 16 N 1.32143 * 122.02035 * 0.02562 * 14 13 4 17 17 H 1.08994 * 109.46995 * 270.26386 * 1 2 3 18 18 H 1.08994 * 109.46925 * 30.26652 * 1 2 3 19 19 H 1.09000 * 109.47035 * 150.26570 * 1 2 3 20 20 H 1.08001 * 120.91237 * 359.97438 * 3 2 1 21 21 H 0.96995 * 120.00269 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2063 1.1935 0.0000 4 6 3.6144 1.1396 -0.0056 5 6 4.3821 2.3288 -0.0109 6 1 3.8891 3.2898 -0.0154 7 6 5.7814 2.2592 -0.0159 8 7 6.3779 1.0966 -0.0101 9 14 6.7945 3.8285 -0.0309 10 1 6.4797 4.6326 1.1773 11 1 8.2393 3.4850 -0.0335 12 1 6.4702 4.6156 -1.2476 13 7 4.2126 -0.0601 0.0000 14 6 3.4978 -1.1636 0.0054 15 35 4.3878 -2.8321 0.0125 16 7 2.1765 -1.1426 0.0051 17 1 -0.3633 0.0047 1.0276 18 1 -0.3633 0.8875 -0.5179 19 1 -0.3633 -0.8924 -0.5097 20 1 1.6873 2.1406 -0.0004 21 1 7.3466 1.0484 -0.0140 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260825351.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:38 Heat of formation + Delta-G solvation = 30.662779 kcal Electronic energy + Delta-G solvation = -10103.972575 eV Core-core repulsion = 8025.718577 eV Total energy + Delta-G solvation = -2078.253998 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.04842 -34.30391 -32.60411 -31.35769 -29.45760 -27.72104 -25.91330 -21.93123 -21.17593 -17.69815 -15.91174 -15.12427 -14.36857 -13.84986 -13.79271 -12.86731 -12.28905 -12.13500 -11.80985 -11.41649 -11.18083 -10.90468 -10.37414 -10.12406 -9.62532 -9.50111 -9.16073 -8.65617 -7.99185 -7.65752 -6.62078 -4.91900 2.33491 2.38638 2.70579 2.98564 3.00381 3.10092 3.78902 4.54931 5.43064 5.55023 5.84920 6.17470 6.22262 6.41312 6.60042 6.60793 6.93529 7.06915 7.55067 7.86041 8.30098 8.56481 8.81242 9.77862 10.06611 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.026667 B = 0.011184 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.725998 B = 2503.073268 C = 3537.650706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.161 3.839 3 C -0.313 4.313 4 C 0.268 3.732 5 C -0.410 4.410 6 H 0.092 0.908 7 C 0.065 3.935 8 N -0.698 5.698 9 Si 0.915 3.085 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.262 1.262 13 N -0.491 5.491 14 C 0.330 3.670 15 Br -0.017 7.017 16 N -0.603 5.603 17 H 0.066 0.934 18 H 0.064 0.936 19 H 0.066 0.934 20 H 0.113 0.887 21 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -2.025 0.003 2.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.022 3.978 3 C -0.340 4.340 4 C 0.140 3.860 5 C -0.443 4.443 6 H 0.110 0.890 7 C -0.163 4.163 8 N -0.319 5.319 9 Si 0.738 3.262 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.187 1.187 13 N -0.213 5.213 14 C -0.020 4.020 15 Br 0.064 6.936 16 N -0.330 5.330 17 H 0.084 0.916 18 H 0.083 0.917 19 H 0.085 0.915 20 H 0.131 0.869 21 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.036 -3.572 0.008 3.719 hybrid contribution -0.087 1.822 0.001 1.824 sum -1.123 -1.750 0.009 2.079 Atomic orbital electron populations 1.20524 0.90420 1.02007 1.01778 1.20890 0.95350 0.88578 0.92988 1.22274 0.96243 0.97789 1.17722 1.18762 0.88720 0.90911 0.87625 1.19692 0.90920 0.92479 1.41231 0.88992 1.26183 0.98765 0.97804 0.93548 1.70056 1.10998 1.25195 1.25634 0.86257 0.78484 0.81340 0.80106 1.18682 1.19925 1.18680 1.69185 1.37278 0.96203 1.18628 1.23697 0.87802 0.92260 0.98279 1.96467 1.77635 1.21800 1.97716 1.67723 1.08204 1.30082 1.27028 0.91556 0.91669 0.91533 0.86909 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 10.21 36.01 0.37 -1.17 14 2 C 0.16 3.71 6.82 -82.30 -0.56 3.15 14 3 C -0.31 -7.56 9.63 -38.54 -0.37 -7.93 14 4 C 0.27 7.26 6.58 -84.62 -0.56 6.71 14 5 C -0.41 -10.50 9.19 -37.62 -0.35 -10.85 14 6 H 0.09 2.15 7.85 -52.49 -0.41 1.73 14 7 C 0.07 1.59 5.50 -17.34 -0.10 1.50 14 8 N -0.70 -18.04 11.52 55.55 0.64 -17.40 14 9 Si 0.91 17.65 29.56 -169.99 -5.02 12.62 14 10 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 11 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 12 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 13 N -0.49 -13.70 7.99 -10.89 -0.09 -13.79 14 14 C 0.33 8.61 8.06 -92.12 -0.74 7.86 14 15 Br -0.02 -0.38 34.03 -68.01 -2.31 -2.69 14 16 N -0.60 -15.10 10.30 -9.26 -0.10 -15.19 14 17 H 0.07 1.04 8.14 -51.93 -0.42 0.61 14 18 H 0.06 0.97 8.09 -51.93 -0.42 0.55 14 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 14 20 H 0.11 2.42 8.06 -52.49 -0.42 2.00 14 21 H 0.28 6.55 8.29 -40.82 -0.34 6.21 14 LS Contribution 219.30 15.07 3.30 3.30 Total: -1.00 -28.92 219.30 -7.12 -36.04 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -1.23 Total: -2.17 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.31 Total: -0.74 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.46 Total: -46.38 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.02 Total: 12.62 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.31 Total: -2.69 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.92 -7.12 -36.04 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260825351.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.703 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds