Wall clock time and date at job start Mon Mar 30 2020 05:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32022 * 118.80539 * 2 1 4 4 C 1.31949 * 121.11454 * 179.71924 * 3 2 1 5 5 C 1.41078 * 118.78807 * 0.57843 * 4 3 2 6 6 C 1.41365 * 121.05277 * 179.71728 * 5 4 3 7 7 H 1.08002 * 119.99931 * 154.71031 * 6 5 4 8 8 C 1.39953 * 120.00013 * 334.69412 * 6 5 4 9 9 N 1.30825 * 120.00309 * 334.95130 * 8 6 5 10 10 Si 1.86808 * 119.99713 * 154.94375 * 8 6 5 11 11 H 1.48494 * 109.47232 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.47317 * 300.00609 * 10 8 6 13 13 H 1.48506 * 109.46849 * 60.00527 * 10 8 6 14 14 C 1.41223 * 117.88671 * 359.44080 * 5 4 3 15 15 Br 1.89099 * 120.61938 * 180.29467 * 14 5 4 16 16 N 1.31952 * 118.80868 * 180.02562 * 2 1 3 17 17 H 1.09000 * 109.47494 * 269.97350 * 1 2 3 18 18 H 1.09011 * 109.47556 * 29.97797 * 1 2 3 19 19 H 1.08998 * 109.47524 * 149.97448 * 1 2 3 20 20 H 1.07998 * 120.61119 * 180.31404 * 4 3 2 21 21 H 0.96997 * 119.99758 * 354.22904 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1431 1.1569 0.0000 4 6 3.4615 1.2100 0.0055 5 6 4.1902 0.0020 -0.0010 6 6 5.6038 0.0032 -0.0014 7 1 6.1446 -0.8441 0.3936 8 6 6.3025 1.1021 -0.5141 9 7 5.7398 1.8774 -1.4051 10 14 8.0386 1.4621 0.0741 11 1 8.5544 2.6715 -0.6161 12 1 8.0258 1.6972 1.5403 13 1 8.9157 0.3039 -0.2338 14 6 3.4625 -1.2083 -0.0010 15 35 4.3610 -2.8722 -0.0011 16 7 2.1428 -1.1562 -0.0005 17 1 -0.3634 -0.0005 1.0276 18 1 -0.3634 0.8902 -0.5135 19 1 -0.3634 -0.8897 -0.5142 20 1 3.9735 2.1609 0.0106 21 1 4.8728 1.6444 -1.7723 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260832990.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:44 Heat of formation + Delta-G solvation = 2.130855 kcal Electronic energy + Delta-G solvation = -10184.618327 eV Core-core repulsion = 8105.127092 eV Total energy + Delta-G solvation = -2079.491235 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.26611 -36.80060 -34.53019 -33.25566 -31.19727 -30.06074 -26.51942 -24.54345 -23.15515 -20.15956 -18.42011 -17.01240 -16.27183 -15.93734 -15.46427 -14.53843 -14.05690 -13.80633 -13.51931 -13.09897 -12.90177 -12.52969 -12.28915 -11.96242 -11.67347 -11.19593 -10.94459 -10.81823 -10.09613 -9.94131 -9.46098 -6.79735 0.30284 0.44096 0.71872 1.53375 1.62664 1.83753 2.25262 2.49931 3.21668 3.59989 3.73908 4.28691 4.54541 4.70880 4.82745 4.95122 5.11469 5.34746 5.61504 5.69367 5.98066 6.39011 6.52890 7.53252 7.70528 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.013694 C = 0.009027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.344894 B = 2044.188437 C = 3101.019518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.127 3.873 3 N -0.489 5.489 4 C 0.028 3.972 5 C -0.010 4.010 6 C -0.472 4.472 7 H 0.104 0.896 8 C 0.008 3.992 9 N -0.779 5.779 10 Si 1.118 2.882 11 H -0.268 1.268 12 H -0.257 1.257 13 H -0.251 1.251 14 C 0.011 3.989 15 Br -0.019 7.019 16 N -0.471 5.471 17 H 0.074 0.926 18 H 0.078 0.922 19 H 0.076 0.924 20 H 0.149 0.851 21 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -4.137 2.078 4.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.136 4.136 3 N -0.202 5.202 4 C -0.148 4.148 5 C -0.019 4.019 6 C -0.499 4.499 7 H 0.122 0.878 8 C -0.212 4.212 9 N -0.399 5.399 10 Si 0.933 3.067 11 H -0.192 1.192 12 H -0.181 1.181 13 H -0.175 1.175 14 C -0.216 4.216 15 Br 0.064 6.936 16 N -0.185 5.185 17 H 0.093 0.907 18 H 0.097 0.903 19 H 0.095 0.905 20 H 0.167 0.833 21 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.052 -3.691 1.868 4.617 hybrid contribution -0.812 -0.737 -0.015 1.097 sum 1.240 -4.428 1.853 4.957 Atomic orbital electron populations 1.20141 0.84538 1.03000 1.02829 1.22937 0.98469 0.82604 1.09563 1.67578 1.10870 1.30950 1.10797 1.23158 0.89064 0.97507 1.05088 1.19260 0.96476 0.92044 0.94133 1.21087 0.90448 1.06141 1.32219 0.87778 1.28801 1.10240 0.90307 0.91857 1.70617 1.17346 1.35109 1.16805 0.82993 0.67618 0.78473 0.77651 1.19212 1.18143 1.17463 1.23045 0.90997 0.91354 1.16213 1.96356 1.75751 1.23595 1.97865 1.67237 1.09342 1.31499 1.10453 0.90696 0.90324 0.90493 0.83341 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.65 10.30 71.23 0.73 -0.92 14 2 C 0.13 6.02 7.64 138.63 1.06 7.08 14 3 N -0.49 -24.38 10.30 -185.86 -1.91 -26.30 14 4 C 0.03 1.41 9.24 85.37 0.79 2.20 14 5 C -0.01 -0.50 5.32 -21.08 -0.11 -0.61 14 6 C -0.47 -22.57 8.47 23.46 0.20 -22.37 14 7 H 0.10 4.77 7.07 -2.91 -0.02 4.75 14 8 C 0.01 0.37 4.99 85.26 0.43 0.80 14 9 N -0.78 -37.52 12.36 21.83 0.27 -37.25 14 10 Si 1.12 37.02 30.00 68.60 2.06 39.08 14 11 H -0.27 -8.80 7.11 99.48 0.71 -8.09 14 12 H -0.26 -8.03 7.11 99.48 0.71 -7.32 14 13 H -0.25 -7.58 7.11 99.48 0.71 -6.87 14 14 C 0.01 0.57 7.30 85.39 0.62 1.20 14 15 Br -0.02 -0.77 32.47 -20.37 -0.66 -1.43 14 16 N -0.47 -23.32 10.29 -180.80 -1.86 -25.18 14 17 H 0.07 2.39 8.14 -2.39 -0.02 2.37 14 18 H 0.08 2.55 8.14 -2.38 -0.02 2.53 14 19 H 0.08 2.50 8.14 -2.39 -0.02 2.48 14 20 H 0.15 7.50 6.59 -2.91 -0.02 7.48 14 21 H 0.29 14.67 6.65 -92.71 -0.62 14.05 14 Total: -1.00 -55.33 214.75 3.02 -52.32 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.41 Total: 11.38 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 3.72 Total: -12.62 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -3.50 Total: -88.73 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.06 Total: 39.08 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -0.66 Total: -1.43 kcal Total: -55.33 3.02 -52.32 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260832990.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.448 kcal (2) G-P(sol) polarization free energy of solvation -55.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds