Wall clock time and date at job start Mon Mar 30 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99506 * 2 1 4 4 H 1.48501 * 109.46855 * 270.00077 * 3 2 1 5 5 H 1.48492 * 109.47062 * 30.00140 * 3 2 1 6 6 H 1.48503 * 109.46715 * 150.00228 * 3 2 1 7 7 C 1.37873 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99974 * 359.97438 * 7 2 1 10 10 S 1.81403 * 109.46842 * 179.97438 * 9 7 2 11 11 O 1.42102 * 110.54112 * 68.37929 * 10 9 7 12 12 O 1.42094 * 110.54751 * 291.62468 * 10 9 7 13 13 C 1.76206 * 104.44818 * 179.97438 * 10 9 7 14 14 C 1.38269 * 119.94243 * 90.00242 * 13 10 9 15 15 C 1.38137 * 120.06013 * 180.02562 * 14 13 10 16 16 C 1.38737 * 119.94162 * 359.97438 * 15 14 13 17 17 O 1.35896 * 120.05545 * 180.02562 * 16 15 14 18 18 C 1.38734 * 119.88732 * 0.27760 * 16 15 14 19 19 C 1.38140 * 119.94299 * 359.46795 * 18 16 15 20 20 H 0.96992 * 120.00589 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46935 * 60.00449 * 9 7 2 22 22 H 1.08998 * 109.47353 * 300.00107 * 9 7 2 23 23 H 1.08008 * 119.96973 * 0.02562 * 14 13 10 24 24 H 1.07997 * 120.03660 * 179.97438 * 15 14 13 25 25 H 0.96700 * 114.00170 * 90.00174 * 17 16 15 26 26 H 1.07999 * 120.02623 * 179.72382 * 18 16 15 27 27 H 1.08003 * 119.97390 * 180.23377 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 16 2.4301 -3.8778 -0.0021 11 8 3.1277 -3.9386 1.2344 12 8 3.1259 -3.9376 -1.2395 13 6 1.4190 -5.3209 -0.0012 14 6 1.0216 -5.8859 -1.1989 15 6 0.2285 -7.0169 -1.2011 16 6 -0.1689 -7.5862 0.0001 17 8 -0.9487 -8.6992 0.0007 18 6 0.2267 -7.0143 1.2005 19 6 1.0242 -5.8864 1.1972 20 1 -0.4850 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 1.3317 -5.4426 -2.1338 24 1 -0.0819 -7.4577 -2.1368 25 1 -0.4510 -9.5282 0.0000 26 1 -0.0851 -7.4531 2.1368 27 1 1.3356 -5.4430 2.1315 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260850461.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:38 Heat of formation + Delta-G solvation = -94.963887 kcal Electronic energy + Delta-G solvation = -14889.197206 eV Core-core repulsion = 12125.507363 eV Total energy + Delta-G solvation = -2763.689844 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.66998 -36.78632 -36.16991 -35.00903 -33.39061 -31.02492 -29.95685 -29.05584 -23.66599 -22.85453 -22.74605 -18.57939 -18.51636 -17.29313 -16.45076 -15.92208 -15.49671 -15.39008 -14.55815 -14.42929 -14.25699 -13.46913 -12.95967 -12.56528 -12.32465 -12.25260 -12.10743 -11.45236 -11.18172 -11.11885 -10.92845 -10.66528 -10.57853 -10.34798 -9.84529 -9.29763 -9.02875 -8.85264 -8.74451 -6.36359 -4.47996 0.78814 1.15851 1.33428 3.20462 3.25983 3.31672 3.39332 3.86144 4.03022 4.22851 4.71606 4.80331 4.92365 4.98234 5.15296 5.36735 5.61177 5.65890 5.97866 6.02252 6.24886 6.29851 6.65400 6.70286 6.72829 7.40314 7.44408 7.69998 8.53906 9.20104 10.75113 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.041832 B = 0.006317 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.188636 B = 4431.743262 C = 4632.835904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.073 0.927 9 C -0.393 4.393 10 S 2.466 3.534 11 O -0.960 6.960 12 O -0.960 6.960 13 C -0.660 4.660 14 C -0.009 4.009 15 C -0.170 4.170 16 C 0.144 3.856 17 O -0.501 6.501 18 C -0.170 4.170 19 C -0.009 4.009 20 H 0.269 0.731 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.146 0.854 24 H 0.134 0.866 25 H 0.393 0.607 26 H 0.134 0.866 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -12.733 0.000 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.091 0.909 9 C -0.529 4.529 10 S 2.649 3.351 11 O -0.957 6.957 12 O -0.957 6.957 13 C -0.743 4.743 14 C -0.028 4.028 15 C -0.189 4.189 16 C 0.099 3.901 17 O -0.311 6.311 18 C -0.189 4.189 19 C -0.028 4.028 20 H 0.079 0.921 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.163 0.837 24 H 0.152 0.848 25 H 0.250 0.750 26 H 0.152 0.848 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.979 -12.322 0.004 12.361 hybrid contribution -0.306 0.138 -0.009 0.336 sum -1.285 -12.184 -0.005 12.252 Atomic orbital electron populations 1.69948 1.06274 1.27848 1.47312 1.24929 0.95025 0.99605 0.93391 0.86342 0.80013 0.81644 0.78800 1.19851 1.20609 1.19013 1.20363 0.92931 0.88477 1.55900 0.90928 1.27463 1.09530 1.08647 1.07234 1.06685 0.77964 0.76184 0.74282 1.93453 1.71056 1.86572 1.44649 1.93452 1.71121 1.86579 1.44580 1.31286 1.20352 1.23909 0.98735 1.20906 0.91492 0.92975 0.97389 1.21500 1.00608 0.98831 0.97958 1.18696 0.90072 0.88627 0.92658 1.84786 1.34625 1.15151 1.96587 1.21498 1.00549 0.98873 0.97963 1.20904 0.91480 0.92983 0.97384 0.92092 0.89284 0.89269 0.83662 0.84794 0.75024 0.84793 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.44 13.29 55.43 0.74 -23.70 15 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 15 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.54 -14.51 9.13 -34.44 -0.31 -14.83 15 8 H 0.07 1.91 7.71 -52.48 -0.40 1.51 15 9 C -0.39 -9.27 5.74 36.00 0.21 -9.06 15 10 S 2.47 51.66 5.08 -107.50 -0.55 51.11 15 11 O -0.96 -21.98 17.12 -57.54 -0.98 -22.96 15 12 O -0.96 -21.96 17.12 -57.54 -0.99 -22.94 15 13 C -0.66 -11.56 5.66 -39.56 -0.22 -11.79 15 14 C -0.01 -0.14 9.46 -39.61 -0.37 -0.52 15 15 C -0.17 -2.31 9.99 -39.43 -0.39 -2.70 15 16 C 0.14 1.90 6.71 -39.21 -0.26 1.63 15 17 O -0.50 -5.40 13.50 -19.41 -0.26 -5.66 15 18 C -0.17 -2.30 9.99 -39.43 -0.39 -2.70 15 19 C -0.01 -0.14 9.46 -39.61 -0.37 -0.51 15 20 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 21 H 0.09 2.07 8.14 -51.92 -0.42 1.64 15 22 H 0.09 2.07 8.14 -51.93 -0.42 1.65 15 23 H 0.15 2.14 7.57 -52.48 -0.40 1.74 15 24 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 25 H 0.39 2.14 9.06 45.56 0.41 2.56 15 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.15 2.14 7.57 -52.48 -0.40 1.74 15 LS Contribution 261.17 15.07 3.94 3.94 Total: -1.00 -33.61 261.17 -6.97 -40.58 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -1.61 Total: 2.54 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: -2.23 Total: -38.48 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.74 Total: -23.70 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -2.23 Total: -51.56 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.55 Total: 51.11 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.61 -6.97 -40.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260850461.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.382 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds