Wall clock time and date at job start Mon Mar 30 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99506 * 2 1 4 4 H 1.48501 * 109.46855 * 270.00077 * 3 2 1 5 5 H 1.48492 * 109.47062 * 30.00140 * 3 2 1 6 6 H 1.48503 * 109.46715 * 150.00228 * 3 2 1 7 7 C 1.37873 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99974 * 359.97438 * 7 2 1 10 10 S 1.81403 * 109.46842 * 179.97438 * 9 7 2 11 11 O 1.42102 * 110.54112 * 68.37929 * 10 9 7 12 12 O 1.42094 * 110.54751 * 291.62468 * 10 9 7 13 13 C 1.76206 * 104.44818 * 179.97438 * 10 9 7 14 14 C 1.38269 * 119.94243 * 90.00242 * 13 10 9 15 15 C 1.38137 * 120.06013 * 180.02562 * 14 13 10 16 16 C 1.38737 * 119.94162 * 359.97438 * 15 14 13 17 17 O 1.35896 * 120.05545 * 180.02562 * 16 15 14 18 18 C 1.38734 * 119.88732 * 0.27760 * 16 15 14 19 19 C 1.38140 * 119.94299 * 359.46795 * 18 16 15 20 20 H 0.96992 * 120.00589 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46935 * 60.00449 * 9 7 2 22 22 H 1.08998 * 109.47353 * 300.00107 * 9 7 2 23 23 H 1.08008 * 119.96973 * 0.02562 * 14 13 10 24 24 H 1.07997 * 120.03660 * 179.97438 * 15 14 13 25 25 H 0.96700 * 114.00170 * 90.00174 * 17 16 15 26 26 H 1.07999 * 120.02623 * 179.72382 * 18 16 15 27 27 H 1.08003 * 119.97390 * 180.23377 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 16 2.4301 -3.8778 -0.0021 11 8 3.1277 -3.9386 1.2344 12 8 3.1259 -3.9376 -1.2395 13 6 1.4190 -5.3209 -0.0012 14 6 1.0216 -5.8859 -1.1989 15 6 0.2285 -7.0169 -1.2011 16 6 -0.1689 -7.5862 0.0001 17 8 -0.9487 -8.6992 0.0007 18 6 0.2267 -7.0143 1.2005 19 6 1.0242 -5.8864 1.1972 20 1 -0.4850 0.8399 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 1.3317 -5.4426 -2.1338 24 1 -0.0819 -7.4577 -2.1368 25 1 -0.4510 -9.5282 0.0000 26 1 -0.0851 -7.4531 2.1368 27 1 1.3356 -5.4430 2.1315 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260850461.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:37 Heat of formation + Delta-G solvation = -121.301082 kcal Electronic energy + Delta-G solvation = -14890.339273 eV Core-core repulsion = 12125.507363 eV Total energy + Delta-G solvation = -2764.831910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72525 -37.94211 -37.78750 -36.78432 -35.40820 -32.14829 -31.19205 -30.93709 -25.60267 -23.98014 -23.97797 -20.04811 -19.55902 -19.08442 -18.17832 -17.25982 -17.22183 -16.46944 -16.12155 -16.08919 -15.55722 -14.56275 -14.50192 -14.17385 -14.06178 -13.60140 -13.35638 -13.22139 -12.98295 -12.90063 -12.71878 -12.52680 -11.92124 -11.72863 -11.57193 -11.04790 -10.77476 -10.15180 -10.07000 -8.40585 -6.59279 -0.65595 -0.25387 0.21589 1.40344 1.41296 1.53512 2.19185 2.28709 2.40386 2.93509 3.06785 3.13360 3.35994 3.81016 3.90383 4.24584 4.36833 4.60412 4.77052 4.78320 4.89832 4.96052 5.08788 5.21548 5.33960 5.66712 5.71297 6.50742 6.73392 7.12588 8.71872 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.041832 B = 0.006317 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.188636 B = 4431.743262 C = 4632.835904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.569 4.569 8 H 0.068 0.932 9 C -0.410 4.410 10 S 2.497 3.503 11 O -0.984 6.984 12 O -0.984 6.984 13 C -0.675 4.675 14 C -0.022 4.022 15 C -0.168 4.168 16 C 0.161 3.839 17 O -0.500 6.500 18 C -0.168 4.168 19 C -0.022 4.022 20 H 0.274 0.726 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.149 0.851 24 H 0.164 0.836 25 H 0.420 0.580 26 H 0.164 0.836 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -14.296 -0.014 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.607 4.607 8 H 0.086 0.914 9 C -0.543 4.543 10 S 2.684 3.316 11 O -0.981 6.981 12 O -0.981 6.981 13 C -0.764 4.764 14 C -0.041 4.041 15 C -0.187 4.187 16 C 0.116 3.884 17 O -0.315 6.315 18 C -0.187 4.187 19 C -0.041 4.041 20 H 0.083 0.917 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.166 0.834 24 H 0.182 0.818 25 H 0.282 0.718 26 H 0.181 0.819 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.532 -13.850 -0.012 13.935 hybrid contribution -0.236 0.387 -0.004 0.454 sum -1.767 -13.463 -0.016 13.578 Atomic orbital electron populations 1.70024 1.07543 1.28959 1.47983 1.25832 0.95947 1.03100 0.92827 0.85443 0.78924 0.77607 0.79327 1.18867 1.19423 1.18598 1.20803 0.93246 0.90490 1.56188 0.91360 1.27523 1.10317 1.09807 1.06694 1.05179 0.77212 0.76084 0.73126 1.93409 1.71951 1.87176 1.45605 1.93408 1.72006 1.87180 1.45522 1.30547 1.22320 1.22880 1.00612 1.21080 0.92222 0.94012 0.96805 1.21789 0.99524 0.97749 0.99656 1.18769 0.88397 0.88998 0.92224 1.84729 1.34670 1.15741 1.96403 1.21786 0.99466 0.97795 0.99663 1.21077 0.92216 0.94017 0.96797 0.91654 0.89726 0.89715 0.83377 0.81850 0.71805 0.81855 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.44 13.29 21.45 0.28 -51.15 15 2 C 0.03 1.44 5.46 84.65 0.46 1.90 15 3 Si 0.96 42.35 29.54 68.60 2.03 44.37 15 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 15 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 7 C -0.57 -31.61 9.13 25.60 0.23 -31.37 15 8 H 0.07 3.72 7.71 -2.91 -0.02 3.70 15 9 C -0.41 -20.08 5.74 71.24 0.41 -19.67 15 10 S 2.50 107.31 5.08 -56.49 -0.29 107.03 15 11 O -0.98 -46.06 17.12 -127.65 -2.19 -48.25 15 12 O -0.98 -46.00 17.12 -127.65 -2.19 -48.19 15 13 C -0.68 -23.44 5.66 22.28 0.13 -23.32 15 14 C -0.02 -0.68 9.46 22.25 0.21 -0.47 15 15 C -0.17 -4.06 9.99 22.37 0.22 -3.83 15 16 C 0.16 3.65 6.71 22.51 0.15 3.80 15 17 O -0.50 -8.46 13.50 -92.38 -1.25 -9.71 15 18 C -0.17 -4.06 9.99 22.37 0.22 -3.83 15 19 C -0.02 -0.67 9.46 22.25 0.21 -0.46 15 20 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 21 H 0.08 4.12 8.14 -2.39 -0.02 4.10 15 22 H 0.08 4.12 8.14 -2.39 -0.02 4.11 15 23 H 0.15 4.29 7.57 -2.91 -0.02 4.27 15 24 H 0.16 2.92 8.06 -2.91 -0.02 2.90 15 25 H 0.42 2.47 9.06 -74.06 -0.67 1.80 15 26 H 0.16 2.92 8.06 -2.91 -0.02 2.90 15 27 H 0.15 4.30 7.57 -2.91 -0.02 4.27 15 Total: -1.00 -72.12 261.17 -0.82 -72.93 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.53 Total: 10.22 kcal Atomic # 6 Polarization: -79.51 SS G_CDS: 2.25 Total: -77.26 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.28 Total: -51.15 kcal Atomic # 8 Polarization: -100.53 SS G_CDS: -5.62 Total: -106.15 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 107.31 SS G_CDS: -0.29 Total: 107.03 kcal Total: -72.12 -0.82 -72.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260850461.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.366 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds