Wall clock time and date at job start Mon Mar 30 2020 05:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32047 * 118.96545 * 2 1 4 4 C 1.32515 * 121.27239 * 180.02562 * 3 2 1 5 5 Br 1.89096 * 120.38617 * 179.97438 * 4 3 2 6 6 C 1.38486 * 119.22312 * 359.97438 * 4 3 2 7 7 C 1.40841 * 118.14697 * 0.02562 * 6 4 3 8 8 C 1.41561 * 120.65735 * 179.97438 * 7 6 4 9 9 H 1.08002 * 119.99619 * 359.97438 * 8 7 6 10 10 C 1.40105 * 119.99867 * 180.27482 * 8 7 6 11 11 N 1.30674 * 120.00075 * 359.71952 * 10 8 7 12 12 Si 1.86801 * 119.99777 * 179.72047 * 10 8 7 13 13 H 1.48504 * 109.47209 * 90.00118 * 12 10 8 14 14 H 1.48499 * 109.47039 * 210.00069 * 12 10 8 15 15 H 1.48501 * 109.47275 * 329.99869 * 12 10 8 16 16 N 1.31367 * 118.97331 * 180.28376 * 2 1 3 17 17 H 1.09002 * 109.47305 * 90.00228 * 1 2 3 18 18 H 1.09002 * 109.46921 * 209.99723 * 1 2 3 19 19 H 1.08994 * 109.47350 * 329.99705 * 1 2 3 20 20 H 1.08003 * 120.92537 * 180.02562 * 6 4 3 21 21 H 0.97004 * 119.99542 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1465 1.1553 0.0000 4 6 3.4706 1.2086 -0.0005 5 35 4.3606 2.8770 -0.0012 6 6 4.1948 0.0282 -0.0005 7 6 3.4837 -1.1875 -0.0005 8 6 4.1705 -2.4254 -0.0011 9 1 5.2503 -2.4438 -0.0019 10 6 3.4493 -3.6265 -0.0069 11 7 2.1427 -3.6042 -0.0063 12 14 4.3555 -5.2600 -0.0155 13 1 4.5961 -5.7000 1.3823 14 1 3.5351 -6.2775 -0.7204 15 1 5.6556 -5.1011 -0.7152 16 7 2.1434 -1.1492 -0.0057 17 1 -0.3634 0.0000 -1.0277 18 1 -0.3633 -0.8900 0.5138 19 1 -0.3634 0.8899 0.5138 20 1 5.2748 0.0396 -0.0005 21 1 1.6434 -4.4359 -0.0107 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260860429.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:46 Heat of formation + Delta-G solvation = 14.470443 kcal Electronic energy + Delta-G solvation = -10106.199291 eV Core-core repulsion = 8027.243140 eV Total energy + Delta-G solvation = -2078.956150 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.93819 -36.11846 -34.18111 -33.37092 -31.25772 -29.23292 -28.18310 -23.79250 -22.88122 -19.62141 -17.87574 -16.90775 -16.12379 -15.66529 -15.61256 -14.51658 -13.85714 -13.53547 -13.18405 -13.07647 -12.97282 -12.67710 -12.17195 -11.95480 -11.41892 -11.35217 -11.04556 -10.47011 -9.89823 -9.53188 -8.46178 -6.88077 0.49664 0.52450 0.75394 1.42104 1.53678 1.57819 2.18070 2.71537 3.64504 3.69122 4.05777 4.56415 4.79597 4.86154 4.88451 4.99745 5.10742 5.15456 5.70893 5.98933 6.40978 6.65586 6.84342 8.02298 8.26639 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.040242 B = 0.008313 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.627015 B = 3367.474413 C = 4047.951994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.299 3.701 3 N -0.620 5.620 4 C 0.164 3.836 5 Br -0.021 7.021 6 C -0.303 4.303 7 C 0.234 3.766 8 C -0.430 4.430 9 H 0.104 0.896 10 C 0.022 3.978 11 N -0.734 5.734 12 Si 0.997 3.003 13 H -0.260 1.260 14 H -0.265 1.265 15 H -0.252 1.252 16 N -0.536 5.536 17 H 0.082 0.918 18 H 0.076 0.924 19 H 0.084 0.916 20 H 0.131 0.869 21 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 3.615 -0.020 4.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.027 3.973 3 N -0.346 5.346 4 C -0.054 4.054 5 Br 0.063 6.937 6 C -0.333 4.333 7 C 0.106 3.894 8 C -0.463 4.463 9 H 0.122 0.878 10 C -0.203 4.203 11 N -0.355 5.355 12 Si 0.816 3.184 13 H -0.185 1.185 14 H -0.190 1.190 15 H -0.175 1.175 16 N -0.258 5.258 17 H 0.100 0.900 18 H 0.095 0.905 19 H 0.103 0.897 20 H 0.149 0.851 21 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.646 4.130 -0.031 4.446 hybrid contribution 1.005 -0.737 -0.008 1.246 sum 2.652 3.394 -0.039 4.307 Atomic orbital electron populations 1.20337 0.85205 1.03117 1.03256 1.23803 0.99005 0.83858 0.90602 1.67768 1.08055 1.30905 1.27850 1.22718 0.92459 0.91222 0.98972 1.96499 1.74536 1.25117 1.97593 1.22453 1.00822 0.92557 1.17493 1.19316 0.88634 0.93155 0.88335 1.20195 0.95554 0.89426 1.41144 0.87809 1.27159 0.95710 1.05082 0.92307 1.70139 1.08551 1.30890 1.25950 0.84975 0.79062 0.74651 0.79721 1.18480 1.18959 1.17535 1.69223 1.09258 1.26534 1.20753 0.89992 0.90486 0.89686 0.85082 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.35 10.31 71.24 0.73 -1.62 14 2 C 0.30 14.94 7.64 138.80 1.06 16.00 14 3 N -0.62 -30.70 10.30 -183.04 -1.89 -32.59 14 4 C 0.16 7.79 7.22 84.65 0.61 8.40 14 5 Br -0.02 -0.77 33.91 -20.37 -0.69 -1.46 14 6 C -0.30 -15.02 9.71 22.97 0.22 -14.80 14 7 C 0.23 12.74 6.58 40.26 0.26 13.00 14 8 C -0.43 -21.93 9.19 23.54 0.22 -21.71 14 9 H 0.10 4.83 7.85 -2.91 -0.02 4.80 14 10 C 0.02 1.06 5.50 85.32 0.47 1.53 14 11 N -0.73 -36.87 11.52 21.85 0.25 -36.62 14 12 Si 1.00 34.75 29.56 68.60 2.03 36.78 14 13 H -0.26 -8.78 7.11 99.48 0.71 -8.08 14 14 H -0.27 -8.82 7.11 99.48 0.71 -8.11 14 15 H -0.25 -8.43 7.11 99.48 0.71 -7.72 14 16 N -0.54 -29.49 7.94 -181.41 -1.44 -30.93 14 17 H 0.08 2.90 8.14 -2.39 -0.02 2.88 14 18 H 0.08 2.93 8.14 -2.39 -0.02 2.91 14 19 H 0.08 2.91 8.14 -2.39 -0.02 2.89 14 20 H 0.13 5.90 8.06 -2.91 -0.02 5.87 14 21 H 0.29 12.86 8.29 -92.71 -0.77 12.09 14 Total: -1.00 -59.55 219.33 3.09 -56.46 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.25 Total: 7.54 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 3.58 Total: 0.81 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -3.07 Total: -100.13 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -0.69 Total: -1.46 kcal Total: -59.55 3.09 -56.46 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260860429.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.934 kcal (2) G-P(sol) polarization free energy of solvation -59.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds