Wall clock time and date at job start Mon Mar 30 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32077 * 118.95652 * 2 1 4 4 C 1.32386 * 121.31244 * 180.02562 * 3 2 1 5 5 C 1.38492 * 119.23040 * 359.71644 * 4 3 2 6 6 Br 1.89103 * 120.93881 * 180.30027 * 5 4 3 7 7 C 1.41027 * 118.12214 * 0.54198 * 5 4 3 8 8 C 1.41457 * 120.67167 * 179.73521 * 7 5 4 9 9 H 1.08009 * 119.99910 * 353.25097 * 8 7 5 10 10 C 1.40123 * 120.00357 * 173.25573 * 8 7 5 11 11 N 1.30669 * 119.99559 * 6.16060 * 10 8 7 12 12 Si 1.86796 * 120.00271 * 186.16613 * 10 8 7 13 13 H 1.48503 * 109.47258 * 94.98194 * 12 10 8 14 14 H 1.48501 * 109.47422 * 214.97974 * 12 10 8 15 15 H 1.48497 * 109.47112 * 334.98420 * 12 10 8 16 16 N 1.31348 * 118.96211 * 180.02562 * 2 1 3 17 17 H 1.09002 * 109.46865 * 269.97833 * 1 2 3 18 18 H 1.08994 * 109.47028 * 29.97434 * 1 2 3 19 19 H 1.08993 * 109.46827 * 149.98197 * 1 2 3 20 20 H 1.07993 * 120.38655 * 179.97438 * 4 3 2 21 21 H 0.96999 * 119.99641 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1465 1.1557 0.0000 4 6 3.4692 1.2101 -0.0005 5 6 4.1946 0.0303 0.0049 6 35 6.0855 0.0517 0.0130 7 6 3.4833 -1.1874 -0.0009 8 6 4.1700 -2.4242 -0.0014 9 1 5.2447 -2.4451 -0.1072 10 6 3.4560 -3.6221 0.1352 11 7 2.1494 -3.6066 0.1421 12 14 4.3719 -5.2409 0.3078 13 1 4.5176 -5.5763 1.7471 14 1 3.6097 -6.3163 -0.3763 15 1 5.7165 -5.1172 -0.3102 16 7 2.1431 -1.1492 -0.0005 17 1 -0.3633 -0.0004 1.0277 18 1 -0.3633 0.8902 -0.5134 19 1 -0.3633 -0.8898 -0.5141 20 1 3.9768 2.1633 -0.0009 21 1 1.6551 -4.4358 0.2371 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261033420.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:54 Heat of formation + Delta-G solvation = 14.734825 kcal Electronic energy + Delta-G solvation = -10210.220430 eV Core-core repulsion = 8131.275744 eV Total energy + Delta-G solvation = -2078.944686 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.89632 -36.13326 -34.02889 -33.38547 -31.20055 -28.98907 -27.73587 -24.23814 -22.58190 -19.68445 -17.99870 -16.88464 -16.14705 -15.56685 -15.26826 -14.55293 -13.88069 -13.53509 -13.21556 -12.99484 -12.97468 -12.72370 -11.96414 -11.74752 -11.64371 -11.13971 -10.85292 -10.64835 -9.57209 -9.44508 -8.48807 -6.88616 0.50669 0.90911 1.20248 1.39382 1.53114 1.54911 2.16420 2.72285 3.64505 3.65633 3.93882 4.34886 4.76879 4.82376 4.87346 5.00635 5.11126 5.23050 5.83252 6.02903 6.38098 6.65120 6.94091 8.05266 8.23443 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.015883 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.669635 B = 1762.464730 C = 3121.253937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.293 3.707 3 N -0.628 5.628 4 C 0.174 3.826 5 C -0.316 4.316 6 Br -0.057 7.057 7 C 0.246 3.754 8 C -0.423 4.423 9 H 0.107 0.893 10 C 0.024 3.976 11 N -0.730 5.730 12 Si 0.989 3.011 13 H -0.261 1.261 14 H -0.262 1.262 15 H -0.251 1.251 16 N -0.537 5.537 17 H 0.081 0.919 18 H 0.086 0.914 19 H 0.073 0.927 20 H 0.165 0.835 21 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 1.054 0.198 4.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.022 3.978 3 N -0.352 5.352 4 C 0.011 3.989 5 C -0.404 4.404 6 Br 0.025 6.975 7 C 0.118 3.882 8 C -0.455 4.455 9 H 0.124 0.876 10 C -0.202 4.202 11 N -0.350 5.350 12 Si 0.808 3.192 13 H -0.185 1.185 14 H -0.186 1.186 15 H -0.175 1.175 16 N -0.258 5.258 17 H 0.099 0.901 18 H 0.105 0.895 19 H 0.092 0.908 20 H 0.182 0.818 21 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.427 0.905 0.202 3.550 hybrid contribution 0.781 -0.453 0.084 0.906 sum 4.208 0.453 0.286 4.242 Atomic orbital electron populations 1.20342 0.85464 1.03090 1.03181 1.23827 0.99187 0.84794 0.89962 1.68184 1.09024 1.30157 1.27854 1.22800 0.89841 0.96543 0.89681 1.23300 0.90557 0.98348 1.28227 1.96238 1.03843 1.99008 1.98377 1.19054 0.88443 0.92492 0.88183 1.20350 0.96254 0.89671 1.39228 0.87557 1.27154 0.95706 1.04837 0.92464 1.70134 1.08695 1.30682 1.25537 0.85071 0.79381 0.75014 0.79734 1.18521 1.18596 1.17471 1.69329 1.08356 1.26964 1.21161 0.90055 0.89499 0.90777 0.81797 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.38 10.31 71.24 0.73 -1.65 14 2 C 0.29 14.42 7.64 138.80 1.06 15.48 14 3 N -0.63 -30.10 10.31 -188.01 -1.94 -32.04 14 4 C 0.17 7.98 11.09 84.67 0.94 8.92 14 5 C -0.32 -15.34 6.33 23.01 0.15 -15.19 14 6 Br -0.06 -2.28 32.12 -20.37 -0.65 -2.93 14 7 C 0.25 13.35 6.57 40.28 0.26 13.61 14 8 C -0.42 -21.89 8.83 23.52 0.21 -21.68 14 9 H 0.11 5.20 6.57 -2.91 -0.02 5.18 14 10 C 0.02 1.16 5.49 85.32 0.47 1.62 14 11 N -0.73 -36.88 11.55 21.85 0.25 -36.63 14 12 Si 0.99 35.69 29.56 68.60 2.03 37.71 14 13 H -0.26 -9.13 7.11 99.48 0.71 -8.43 14 14 H -0.26 -8.90 7.11 99.48 0.71 -8.19 14 15 H -0.25 -8.79 7.11 99.48 0.71 -8.09 14 16 N -0.54 -29.42 7.97 -181.34 -1.44 -30.87 14 17 H 0.08 2.84 8.14 -2.39 -0.02 2.82 14 18 H 0.09 2.89 8.14 -2.39 -0.02 2.88 14 19 H 0.07 2.81 8.14 -2.39 -0.02 2.79 14 20 H 0.16 6.31 8.06 -2.91 -0.02 6.29 14 21 H 0.29 12.95 8.29 -92.71 -0.77 12.18 14 Total: -1.00 -59.54 216.44 3.31 -56.22 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.25 Total: 7.43 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 3.82 Total: 1.10 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -3.13 Total: -99.54 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 35 Polarization: -2.28 SS G_CDS: -0.65 Total: -2.93 kcal Total: -59.54 3.31 -56.22 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033420.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.960 kcal (2) G-P(sol) polarization free energy of solvation -59.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds