Wall clock time and date at job start Mon Mar 30 2020 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31043 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47273 * 270.00133 * 3 2 1 5 5 H 1.48503 * 109.47174 * 30.00185 * 3 2 1 6 6 H 1.48507 * 109.47225 * 149.99771 * 3 2 1 7 7 C 1.39734 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00380 * 158.74206 * 7 2 1 9 9 C 1.41087 * 119.99824 * 338.73388 * 7 2 1 10 10 C 1.41859 * 120.70707 * 327.11463 * 9 7 2 11 11 N 1.34890 * 118.00748 * 179.97438 * 10 9 7 12 12 C 1.34717 * 120.70054 * 359.97438 * 11 10 9 13 13 O 1.21901 * 118.96840 * 179.97438 * 12 11 10 14 14 N 1.33336 * 122.06222 * 0.02944 * 12 11 10 15 15 C 1.31689 * 121.12813 * 359.97007 * 14 12 11 16 16 Cl 1.73591 * 120.24237 * 180.02562 * 15 14 12 17 17 C 1.47245 * 108.99637 * 179.97438 * 11 10 9 18 18 C 1.53919 * 104.03955 * 359.92692 * 17 11 10 19 19 O 1.34430 * 128.89727 * 359.94972 * 10 9 7 20 20 H 0.97004 * 119.99613 * 359.90602 * 1 2 3 21 21 H 1.08995 * 110.54366 * 118.60398 * 17 11 10 22 22 H 1.09003 * 110.54153 * 241.25008 * 17 11 10 23 23 H 1.09003 * 110.51051 * 118.72323 * 18 17 11 24 24 H 1.09006 * 110.50721 * 241.42409 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 2.4920 2.0465 -1.4001 5 1 1.4419 2.6527 0.7001 6 1 3.5421 1.4402 0.7001 7 6 2.0091 -1.2101 -0.0005 8 1 3.0341 -1.2418 -0.3397 9 6 1.3757 -2.3906 0.4421 10 6 0.4017 -2.3473 1.4725 11 7 -0.1698 -3.5084 1.8531 12 6 0.1783 -4.6707 1.2675 13 8 -0.3579 -5.7014 1.6364 14 7 1.0917 -4.7291 0.2979 15 6 1.6977 -3.6421 -0.1329 16 17 2.8829 -3.7447 -1.3970 17 6 -1.1414 -3.2356 2.9253 18 6 -1.0566 -1.7121 3.1273 19 8 -0.0576 -1.2847 2.1559 20 1 -0.4850 0.8401 0.0014 21 1 -2.1452 -3.5248 2.6144 22 1 -0.8595 -3.7588 3.8391 23 1 -2.0187 -1.2448 2.9174 24 1 -0.7307 -1.4789 4.1410 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261072334.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:47 Heat of formation + Delta-G solvation = -19.358576 kcal Electronic energy + Delta-G solvation = -15529.528794 eV Core-core repulsion = 12663.533393 eV Total energy + Delta-G solvation = -2865.995401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35284 -38.27112 -36.43070 -35.20100 -34.05136 -33.19836 -30.52544 -29.31329 -25.10207 -23.65850 -23.29203 -21.73160 -18.51866 -17.08620 -16.95988 -16.69069 -15.61565 -14.82961 -14.44245 -14.40266 -14.31874 -13.43264 -13.06274 -12.50181 -11.97437 -11.92296 -11.82841 -11.51175 -11.26990 -10.87103 -10.48688 -10.40393 -9.74511 -9.62718 -9.25356 -9.18834 -8.77389 -7.30089 -6.82959 -4.35445 1.55785 2.43461 2.73990 3.08689 3.10969 3.17097 3.30948 3.73598 3.95426 4.46145 4.51816 4.86188 5.12778 5.15599 5.38634 5.67803 5.73293 5.89774 6.16970 6.61424 7.12718 7.22268 7.66346 8.10621 8.41049 8.70766 8.79282 9.16413 10.18068 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.013555 C = 0.008570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.418631 B = 2065.192489 C = 3266.502834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.092 0.908 9 C -0.035 4.035 10 C 0.290 3.710 11 N -0.525 5.525 12 C 0.632 3.368 13 O -0.588 6.588 14 N -0.569 5.569 15 C 0.268 3.732 16 Cl -0.025 7.025 17 C 0.068 3.932 18 C 0.034 3.966 19 O -0.240 6.240 20 H 0.281 0.719 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 3.496 4.113 5.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.110 0.890 9 C -0.044 4.044 10 C 0.126 3.874 11 N -0.254 5.254 12 C 0.336 3.664 13 O -0.470 6.470 14 N -0.313 5.313 15 C 0.090 3.910 16 Cl 0.004 6.996 17 C -0.055 4.055 18 C -0.042 4.042 19 O -0.143 6.143 20 H 0.091 0.909 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.816 2.288 4.042 4.716 hybrid contribution -0.088 1.574 0.269 1.599 sum -0.903 3.862 4.311 5.858 Atomic orbital electron populations 1.69755 1.07574 1.29523 1.35008 1.25615 0.94550 1.00943 0.92831 0.86293 0.80611 0.80741 0.79055 1.19672 1.20392 1.18517 1.18813 0.99598 0.90174 1.39894 0.89023 1.16752 0.98642 0.93582 0.95378 1.21032 0.96497 0.77024 0.92870 1.47696 1.35294 1.09637 1.32819 1.17171 0.84698 0.81547 0.82995 1.90834 1.58301 1.31198 1.66641 1.68957 1.15050 1.29315 1.17938 1.22461 0.90305 0.89571 0.88708 1.98324 1.53996 1.98372 1.48947 1.22927 0.94730 0.96113 0.91768 1.24314 0.93772 0.92193 0.93894 1.87211 1.52535 1.27494 1.47070 0.90876 0.88620 0.88539 0.88368 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.95 11.00 55.54 0.61 -18.33 14 2 C 0.08 1.82 4.75 -17.33 -0.08 1.73 14 3 Si 0.91 17.78 29.61 -169.99 -5.03 12.74 14 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 14 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 7 C -0.45 -10.94 8.36 -37.94 -0.32 -11.26 14 8 H 0.09 2.12 7.43 -52.48 -0.39 1.73 14 9 C -0.03 -0.85 5.48 -106.21 -0.58 -1.43 14 10 C 0.29 6.71 6.92 -14.82 -0.10 6.61 14 11 N -0.53 -11.70 3.08 -119.89 -0.37 -12.07 14 12 C 0.63 16.15 8.48 -88.25 -0.75 15.40 14 13 O -0.59 -16.13 17.70 5.01 0.09 -16.04 14 14 N -0.57 -14.58 10.43 -13.38 -0.14 -14.72 14 15 C 0.27 6.44 7.38 -16.39 -0.12 6.32 14 16 Cl -0.02 -0.51 27.98 -51.86 -1.45 -1.96 14 17 C 0.07 1.10 7.54 -3.16 -0.02 1.08 14 18 C 0.03 0.50 8.24 37.64 0.31 0.81 14 19 O -0.24 -5.00 8.60 -15.11 -0.13 -5.13 14 20 H 0.28 6.21 8.30 -40.82 -0.34 5.87 14 21 H 0.10 1.42 8.14 -51.93 -0.42 1.00 14 22 H 0.10 1.36 8.14 -51.93 -0.42 0.94 14 23 H 0.10 1.21 8.14 -51.93 -0.42 0.79 14 24 H 0.10 1.08 8.14 -51.93 -0.42 0.66 14 LS Contribution 235.18 15.07 3.54 3.54 Total: -1.00 -30.50 235.18 -5.76 -36.26 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: -1.22 Total: -3.56 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: -1.67 Total: 19.26 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.10 Total: -45.12 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.04 Total: -21.17 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.96 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.50 -5.76 -36.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072334.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.903 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds