Wall clock time and date at job start Mon Mar 30 2020 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31043 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47273 * 270.00133 * 3 2 1 5 5 H 1.48503 * 109.47174 * 30.00185 * 3 2 1 6 6 H 1.48507 * 109.47225 * 149.99771 * 3 2 1 7 7 C 1.39734 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00380 * 158.74206 * 7 2 1 9 9 C 1.41087 * 119.99824 * 338.73388 * 7 2 1 10 10 C 1.41859 * 120.70707 * 327.11463 * 9 7 2 11 11 N 1.34890 * 118.00748 * 179.97438 * 10 9 7 12 12 C 1.34717 * 120.70054 * 359.97438 * 11 10 9 13 13 O 1.21901 * 118.96840 * 179.97438 * 12 11 10 14 14 N 1.33336 * 122.06222 * 0.02944 * 12 11 10 15 15 C 1.31689 * 121.12813 * 359.97007 * 14 12 11 16 16 Cl 1.73591 * 120.24237 * 180.02562 * 15 14 12 17 17 C 1.47245 * 108.99637 * 179.97438 * 11 10 9 18 18 C 1.53919 * 104.03955 * 359.92692 * 17 11 10 19 19 O 1.34430 * 128.89727 * 359.94972 * 10 9 7 20 20 H 0.97004 * 119.99613 * 359.90602 * 1 2 3 21 21 H 1.08995 * 110.54366 * 118.60398 * 17 11 10 22 22 H 1.09003 * 110.54153 * 241.25008 * 17 11 10 23 23 H 1.09003 * 110.51051 * 118.72323 * 18 17 11 24 24 H 1.09006 * 110.50721 * 241.42409 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 2.4920 2.0465 -1.4001 5 1 1.4419 2.6527 0.7001 6 1 3.5421 1.4402 0.7001 7 6 2.0091 -1.2101 -0.0005 8 1 3.0341 -1.2418 -0.3397 9 6 1.3757 -2.3906 0.4421 10 6 0.4017 -2.3473 1.4725 11 7 -0.1698 -3.5084 1.8531 12 6 0.1783 -4.6707 1.2675 13 8 -0.3579 -5.7014 1.6364 14 7 1.0917 -4.7291 0.2979 15 6 1.6977 -3.6421 -0.1329 16 17 2.8829 -3.7447 -1.3970 17 6 -1.1414 -3.2356 2.9253 18 6 -1.0566 -1.7121 3.1273 19 8 -0.0576 -1.2847 2.1559 20 1 -0.4850 0.8401 0.0014 21 1 -2.1452 -3.5248 2.6144 22 1 -0.8595 -3.7588 3.8391 23 1 -2.0187 -1.2448 2.9174 24 1 -0.7307 -1.4789 4.1410 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072334.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:47 Heat of formation + Delta-G solvation = -41.660538 kcal Electronic energy + Delta-G solvation = -15530.495880 eV Core-core repulsion = 12663.533393 eV Total energy + Delta-G solvation = -2866.962487 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.06168 -40.00629 -38.19703 -36.95474 -35.80867 -34.93417 -32.17008 -30.91371 -26.91381 -25.13025 -25.03954 -23.41286 -20.26344 -18.76910 -18.74771 -18.21888 -17.34545 -16.51615 -16.12194 -16.11039 -15.89537 -15.07223 -14.55234 -14.20209 -13.66477 -13.43183 -13.27680 -13.12084 -12.85015 -12.54327 -12.18924 -12.02500 -11.53021 -11.40318 -10.99608 -10.77080 -10.58258 -9.13710 -8.57519 -6.16846 -0.23359 0.72955 0.93930 1.51388 1.54100 1.62471 1.65686 2.25375 2.33889 2.67986 3.17021 3.23872 3.59625 3.82197 4.01938 4.30566 4.45219 4.54895 4.59721 4.80538 5.35567 5.47883 5.96303 6.31192 6.60386 6.89760 6.96835 7.32228 8.45526 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.013555 C = 0.008570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.418631 B = 2065.192489 C = 3266.502834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.046 3.954 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.475 4.475 8 H 0.093 0.907 9 C -0.059 4.059 10 C 0.309 3.691 11 N -0.524 5.524 12 C 0.617 3.383 13 O -0.623 6.623 14 N -0.596 5.596 15 C 0.243 3.757 16 Cl -0.004 7.004 17 C 0.056 3.944 18 C 0.035 3.965 19 O -0.256 6.256 20 H 0.288 0.712 21 H 0.110 0.890 22 H 0.121 0.879 23 H 0.126 0.874 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 5.409 5.221 7.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.169 4.169 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.505 4.505 8 H 0.111 0.889 9 C -0.068 4.068 10 C 0.142 3.858 11 N -0.252 5.252 12 C 0.321 3.679 13 O -0.508 6.508 14 N -0.342 5.342 15 C 0.068 3.932 16 Cl 0.024 6.976 17 C -0.065 4.065 18 C -0.039 4.039 19 O -0.159 6.159 20 H 0.098 0.902 21 H 0.128 0.872 22 H 0.139 0.861 23 H 0.144 0.856 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.188 4.242 5.162 6.786 hybrid contribution -0.053 1.072 0.017 1.073 sum -1.241 5.314 5.180 7.524 Atomic orbital electron populations 1.69791 1.08642 1.30662 1.35209 1.26302 0.95194 1.03438 0.91979 0.85331 0.79325 0.76913 0.79033 1.19435 1.19629 1.18435 1.19001 0.99848 0.90740 1.40953 0.88934 1.17107 0.99422 0.94051 0.96231 1.21190 0.94997 0.77834 0.91758 1.47748 1.35582 1.08593 1.33274 1.17191 0.85169 0.81978 0.83605 1.90782 1.59762 1.32254 1.68029 1.68831 1.16068 1.30390 1.18919 1.22563 0.91458 0.89298 0.89857 1.98307 1.53055 1.98335 1.47875 1.23431 0.94239 0.97767 0.91065 1.24850 0.93840 0.90728 0.94522 1.87187 1.53769 1.27105 1.47823 0.90209 0.87196 0.86140 0.85635 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -37.86 11.00 21.80 0.24 -37.62 14 2 C 0.05 2.09 4.75 85.17 0.40 2.50 14 3 Si 0.97 35.08 29.61 68.60 2.03 37.11 14 4 H -0.27 -9.58 7.11 99.48 0.71 -8.87 14 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 14 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 14 7 C -0.47 -22.66 8.36 23.33 0.20 -22.46 14 8 H 0.09 4.26 7.43 -2.91 -0.02 4.24 14 9 C -0.06 -2.91 5.48 -20.89 -0.11 -3.02 14 10 C 0.31 14.00 6.92 85.12 0.59 14.59 14 11 N -0.52 -22.89 3.08 -763.55 -2.35 -25.24 14 12 C 0.62 31.87 8.48 179.52 1.52 33.39 14 13 O -0.62 -34.67 17.70 -4.99 -0.09 -34.75 14 14 N -0.60 -31.21 10.43 -315.17 -3.29 -34.50 14 15 C 0.24 11.88 7.38 85.50 0.63 12.51 14 16 Cl 0.00 -0.18 27.98 -2.72 -0.08 -0.26 14 17 C 0.06 1.67 7.54 86.55 0.65 2.32 14 18 C 0.03 0.87 8.24 72.29 0.60 1.47 14 19 O -0.26 -10.05 8.60 -76.97 -0.66 -10.71 14 20 H 0.29 12.21 8.30 -92.71 -0.77 11.44 14 21 H 0.11 2.98 8.14 -2.39 -0.02 2.96 14 22 H 0.12 3.03 8.14 -2.39 -0.02 3.01 14 23 H 0.13 2.52 8.14 -2.39 -0.02 2.50 14 24 H 0.14 2.37 8.14 -2.38 -0.02 2.36 14 Total: -1.00 -65.88 235.18 1.53 -64.34 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: 1.25 Total: 0.33 kcal Atomic # 6 Polarization: 36.82 SS G_CDS: 4.48 Total: 41.30 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -5.40 Total: -97.36 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.75 Total: -45.47 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -65.88 1.53 -64.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072334.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.682 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds