Wall clock time and date at job start Mon Mar 30 2020 05:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30966 * 1 3 3 Si 1.86800 * 120.00139 * 2 1 4 4 H 1.48505 * 109.47122 * 274.99510 * 3 2 1 5 5 H 1.48504 * 109.46978 * 34.98809 * 3 2 1 6 6 H 1.48498 * 109.47481 * 154.99138 * 3 2 1 7 7 C 1.39857 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00051 * 158.16252 * 7 2 1 9 9 C 1.40949 * 120.00289 * 338.15623 * 7 2 1 10 10 C 1.47774 * 121.41365 * 325.56376 * 9 7 2 11 11 O 1.22001 * 120.65008 * 0.02562 * 10 9 7 12 12 N 1.33545 * 118.69726 * 179.97438 * 10 9 7 13 13 C 1.32673 * 122.14215 * 0.02562 * 12 10 9 14 14 N 1.35522 * 121.02500 * 359.73458 * 13 12 10 15 15 C 1.36142 * 121.82470 * 0.53300 * 14 13 12 16 16 Cl 1.73604 * 120.43499 * 179.75330 * 15 14 13 17 17 C 1.47435 * 109.17451 * 180.31280 * 14 13 12 18 18 C 1.53793 * 103.96439 * 0.24363 * 17 14 13 19 19 O 1.35306 * 126.50283 * 179.97438 * 13 12 10 20 20 H 0.96999 * 120.00438 * 0.02562 * 1 2 3 21 21 H 1.09000 * 110.53157 * 118.86203 * 17 14 13 22 22 H 1.08996 * 110.53451 * 241.48732 * 17 14 13 23 23 H 1.08991 * 110.47753 * 118.69252 * 18 17 14 24 24 H 1.08999 * 110.47452 * 241.17965 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 2.3856 2.1074 -1.3948 5 1 1.4978 2.6199 0.8028 6 1 3.5900 1.4121 0.5919 7 6 2.0089 -1.2112 -0.0005 8 1 3.0309 -1.2447 -0.3485 9 6 1.3801 -2.3883 0.4531 10 6 0.3978 -2.3605 1.5568 11 8 0.1066 -1.3096 2.1039 12 7 -0.1656 -3.5080 1.9428 13 6 0.1287 -4.6672 1.3684 14 7 1.0204 -4.7357 0.3501 15 6 1.6589 -3.6292 -0.1206 16 17 2.7994 -3.7594 -1.4230 17 6 1.1428 -6.1365 -0.0929 18 6 0.1725 -6.9016 0.8228 19 8 -0.3859 -5.8772 1.6875 20 1 -0.4851 0.8400 -0.0004 21 1 0.8422 -6.2353 -1.1360 22 1 2.1635 -6.4933 0.0451 23 1 -0.6092 -7.3812 0.2340 24 1 0.7107 -7.6415 1.4152 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087312.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:45 Heat of formation + Delta-G solvation = -45.079609 kcal Electronic energy + Delta-G solvation = -15327.092460 eV Core-core repulsion = 12459.981711 eV Total energy + Delta-G solvation = -2867.110749 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.66356 -39.82386 -37.71470 -36.80527 -35.58258 -34.84505 -32.17851 -30.56688 -27.61368 -24.37941 -24.17164 -23.86206 -20.01409 -19.26542 -18.19591 -18.17914 -17.42815 -16.64322 -16.10735 -15.56557 -15.43636 -14.91773 -14.82866 -14.53519 -13.73647 -13.45754 -13.25164 -13.18219 -12.78869 -12.61433 -12.10518 -11.89226 -11.54154 -11.25290 -10.93887 -10.34642 -9.79980 -9.09989 -8.69181 -6.35227 0.50673 0.70010 0.93050 1.37140 1.49843 1.55177 1.63490 2.12140 2.21895 2.79925 3.23375 3.43949 3.70852 3.89731 3.97542 4.44927 4.52392 4.64819 4.78559 5.13187 5.20935 5.58092 6.07443 6.19617 6.52454 6.73447 7.32847 7.64921 8.26136 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.032250 B = 0.009983 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.015520 B = 2804.204580 C = 3539.029613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.248 1.248 5 H -0.278 1.278 6 H -0.252 1.252 7 C -0.437 4.437 8 H 0.100 0.900 9 C -0.022 4.022 10 C 0.522 3.478 11 O -0.549 6.549 12 N -0.670 5.670 13 C 0.547 3.453 14 N -0.486 5.486 15 C -0.059 4.059 16 Cl -0.037 7.037 17 C 0.047 3.953 18 C 0.044 3.956 19 O -0.290 6.290 20 H 0.288 0.712 21 H 0.121 0.879 22 H 0.124 0.876 23 H 0.146 0.854 24 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -13.389 -5.031 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.172 1.172 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.465 4.465 8 H 0.118 0.882 9 C -0.035 4.035 10 C 0.312 3.688 11 O -0.429 6.429 12 N -0.436 5.436 13 C 0.248 3.752 14 N -0.199 5.199 15 C -0.185 4.185 16 Cl -0.009 7.009 17 C -0.074 4.074 18 C -0.030 4.030 19 O -0.192 6.192 20 H 0.099 0.901 21 H 0.139 0.861 22 H 0.142 0.858 23 H 0.164 0.836 24 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.717 -12.711 -4.260 13.912 hybrid contribution 0.743 0.643 -0.617 1.160 sum 4.459 -12.067 -4.878 13.759 Atomic orbital electron populations 1.69854 1.09968 1.31250 1.29118 1.26844 0.95186 1.05108 0.91342 0.85181 0.79220 0.75554 0.79730 1.17184 1.20291 1.17545 1.19354 0.99800 0.91423 1.35973 0.88173 1.20422 0.95850 0.92281 0.94905 1.19208 0.81474 0.85152 0.83014 1.90592 1.63531 1.30829 1.57934 1.68215 1.38810 0.97182 1.39398 1.21341 0.83666 0.87666 0.82529 1.44932 1.35777 1.09031 1.30177 1.20138 1.10270 0.85205 1.02861 1.98223 1.58251 1.97814 1.46658 1.23583 1.04420 0.76811 1.02603 1.24928 0.98002 0.88454 0.91615 1.87140 1.62962 1.12315 1.56770 0.90117 0.86053 0.85762 0.83624 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.64 11.18 21.82 0.24 -45.40 14 2 C 0.04 1.97 4.59 85.21 0.39 2.37 14 3 Si 0.98 41.11 29.61 68.60 2.03 43.14 14 4 H -0.25 -9.35 7.11 99.48 0.71 -8.64 14 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 14 6 H -0.25 -10.13 7.11 99.48 0.71 -9.42 14 7 C -0.44 -23.95 8.32 23.33 0.19 -23.75 14 8 H 0.10 5.09 7.52 -2.91 -0.02 5.07 14 9 C -0.02 -1.23 5.55 -19.78 -0.11 -1.34 14 10 C 0.52 32.03 7.47 86.96 0.65 32.67 14 11 O -0.55 -37.30 15.04 -5.32 -0.08 -37.38 14 12 N -0.67 -37.18 10.44 -430.69 -4.50 -41.68 14 13 C 0.55 23.51 8.90 179.47 1.60 25.11 14 14 N -0.49 -18.35 3.12 -621.45 -1.94 -20.29 14 15 C -0.06 -2.67 7.39 84.34 0.62 -2.05 14 16 Cl -0.04 -1.39 27.52 -2.72 -0.07 -1.46 14 17 C 0.05 0.96 7.29 86.47 0.63 1.59 14 18 C 0.04 0.68 8.20 72.25 0.59 1.27 14 19 O -0.29 -9.23 11.09 -85.93 -0.95 -10.19 14 20 H 0.29 15.57 8.30 -92.71 -0.77 14.80 14 21 H 0.12 2.03 8.14 -2.39 -0.02 2.01 14 22 H 0.12 1.96 8.14 -2.39 -0.02 1.94 14 23 H 0.15 1.23 8.14 -2.39 -0.02 1.21 14 24 H 0.15 1.15 8.14 -2.39 -0.02 1.14 14 Total: -1.00 -80.83 235.42 0.55 -80.28 By element: Atomic # 1 Polarization: -4.14 SS G_CDS: 1.25 Total: -2.89 kcal Atomic # 6 Polarization: 31.30 SS G_CDS: 4.57 Total: 35.87 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -6.19 Total: -107.37 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.03 Total: -47.56 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.07 Total: -1.46 kcal Total: -80.83 0.55 -80.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087312.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.200 kcal (2) G-P(sol) polarization free energy of solvation -80.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds