Wall clock time and date at job start Mon Mar 30 2020 05:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86802 * 120.00293 * 2 1 4 4 H 1.48496 * 109.47418 * 240.00318 * 3 2 1 5 5 H 1.48499 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47186 * 119.99911 * 3 2 1 7 7 C 1.39982 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00188 * 179.97438 * 7 2 1 9 9 C 1.41070 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.40826 * 119.71564 * 180.02562 * 9 7 2 11 11 C 1.36824 * 119.21409 * 180.02562 * 10 9 7 12 12 Br 1.89098 * 120.68462 * 179.97438 * 11 10 9 13 13 C 1.39955 * 118.63020 * 359.97438 * 11 10 9 14 14 N 1.38889 * 120.31126 * 180.02562 * 13 11 10 15 15 C 1.39727 * 119.37711 * 359.97438 * 13 11 10 16 16 N 1.31311 * 120.73876 * 0.26140 * 15 13 11 17 17 H 0.97000 * 119.99377 * 0.02562 * 1 2 3 18 18 H 1.08000 * 120.39063 * 359.97107 * 10 9 7 19 19 H 0.96999 * 120.00002 * 179.97438 * 14 13 11 20 20 H 0.96993 * 120.00165 * 359.97299 * 14 13 11 21 21 H 1.08002 * 119.62876 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0958 1.6964 -1.2125 5 1 1.2771 2.7464 -0.0006 6 1 3.0958 1.6963 1.2125 7 6 2.0079 -1.2123 -0.0005 8 1 3.0879 -1.2123 -0.0010 9 6 1.3025 -2.4340 -0.0005 10 6 2.0126 -3.6501 -0.0005 11 6 1.3181 -4.8289 -0.0011 12 35 2.2294 -6.4858 -0.0018 13 6 -0.0807 -4.7832 -0.0011 14 7 -0.8205 -5.9586 -0.0011 15 6 -0.7259 -3.5438 0.0000 16 7 -0.0348 -2.4273 -0.0041 17 1 -0.4849 0.8401 -0.0004 18 1 3.0926 -3.6521 -0.0010 19 1 -1.7898 -5.9216 -0.0007 20 1 -0.3679 -6.8165 -0.0015 21 1 -1.8052 -3.5038 -0.0004 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306196046.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:49 Heat of formation + Delta-G solvation = 13.711559 kcal Electronic energy + Delta-G solvation = -10079.665838 eV Core-core repulsion = 8000.676780 eV Total energy + Delta-G solvation = -2078.989058 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.28960 -36.28477 -34.55457 -33.31806 -31.05692 -29.86728 -26.73846 -23.79296 -22.80123 -19.36217 -17.93248 -17.42971 -16.92667 -15.87658 -15.30067 -14.66928 -14.45734 -13.95312 -13.11056 -12.96528 -12.78021 -12.39134 -12.17448 -11.85254 -11.64749 -11.11351 -10.82091 -9.89062 -9.61494 -8.56185 -8.24738 -6.20839 0.77415 0.81441 0.97191 1.44829 1.56332 1.57248 2.28874 2.86883 3.34449 3.87738 4.14736 4.55432 4.63663 5.16077 5.23287 5.32908 5.38111 5.82078 6.25723 6.68952 6.82595 7.02092 7.25080 8.12550 8.53754 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.051163 B = 0.007983 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.139038 B = 3506.442328 C = 4043.739871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.025 3.975 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.475 4.475 8 H 0.087 0.913 9 C 0.197 3.803 10 C -0.220 4.220 11 C -0.096 4.096 12 Br -0.055 7.055 13 C 0.065 3.935 14 N -0.869 5.869 15 C 0.051 3.949 16 N -0.472 5.472 17 H 0.277 0.723 18 H 0.115 0.885 19 H 0.403 0.597 20 H 0.395 0.605 21 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -8.921 0.006 9.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.508 4.508 8 H 0.105 0.895 9 C 0.069 3.931 10 C -0.246 4.246 11 C -0.186 4.186 12 Br 0.029 6.971 13 C -0.043 4.043 14 N -0.415 5.415 15 C -0.117 4.117 16 N -0.184 5.184 17 H 0.087 0.913 18 H 0.133 0.867 19 H 0.232 0.768 20 H 0.224 0.776 21 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.019 -8.531 0.001 8.591 hybrid contribution 0.309 -0.120 0.001 0.331 sum 1.327 -8.650 0.002 8.752 Atomic orbital electron populations 1.70221 1.08644 1.28853 1.31410 1.26860 0.95715 1.04202 0.92709 0.85243 0.78585 0.75824 0.79910 1.18492 1.19469 1.18476 1.19690 0.94621 0.90243 1.46213 0.89538 1.18824 0.88414 0.92713 0.93166 1.21392 0.99524 0.91610 1.12056 1.21131 0.92843 0.91251 1.13409 1.96398 1.76825 1.25715 1.98140 1.18284 0.89577 0.89360 1.07056 1.41754 1.08163 1.03806 1.87749 1.22798 0.99949 0.86546 1.02437 1.68608 1.07917 1.27149 1.14736 0.91289 0.86662 0.76817 0.77570 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -41.74 11.45 21.83 0.25 -41.49 14 2 C 0.03 1.30 5.50 85.27 0.47 1.76 14 3 Si 0.98 38.66 29.56 68.60 2.03 40.69 14 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 14 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 14 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 14 7 C -0.47 -25.95 9.12 23.39 0.21 -25.73 14 8 H 0.09 4.42 7.85 -2.91 -0.02 4.40 14 9 C 0.20 10.89 6.55 40.18 0.26 11.15 14 10 C -0.22 -10.78 9.53 22.57 0.22 -10.57 14 11 C -0.10 -4.17 6.25 22.35 0.14 -4.03 14 12 Br -0.06 -1.84 32.27 -20.37 -0.66 -2.50 14 13 C 0.06 2.69 6.80 38.80 0.26 2.95 14 14 N -0.87 -27.21 9.01 -50.71 -0.46 -27.66 14 15 C 0.05 2.39 11.06 85.13 0.94 3.33 14 16 N -0.47 -26.02 7.84 -188.45 -1.48 -27.50 14 17 H 0.28 13.67 8.30 -92.71 -0.77 12.90 14 18 H 0.12 5.33 8.06 -2.91 -0.02 5.31 14 19 H 0.40 10.37 8.84 -92.71 -0.82 9.55 14 20 H 0.39 11.23 7.33 -92.71 -0.68 10.55 14 21 H 0.15 5.98 8.06 -2.91 -0.02 5.96 14 Total: -1.00 -60.70 214.68 1.97 -58.73 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.22 Total: 20.86 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 2.51 Total: -21.13 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -1.68 Total: -96.65 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 35 Polarization: -1.84 SS G_CDS: -0.66 Total: -2.50 kcal Total: -60.70 1.97 -58.73 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306196046.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.440 kcal (2) G-P(sol) polarization free energy of solvation -60.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds