Wall clock time and date at job start Mon Mar 30 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48500 * 109.46926 * 269.99907 * 3 2 1 5 5 H 1.48498 * 109.46823 * 29.99639 * 3 2 1 6 6 H 1.48499 * 109.46912 * 150.00026 * 3 2 1 7 7 C 1.39927 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00195 * 164.09257 * 7 2 1 9 9 C 1.41360 * 120.00226 * 344.09233 * 7 2 1 10 10 C 1.40968 * 120.62756 * 335.11864 * 9 7 2 11 11 C 1.38628 * 118.15539 * 179.72513 * 10 9 7 12 12 N 1.39755 * 120.35223 * 179.97438 * 11 10 9 13 13 C 1.39341 * 119.30436 * 0.02562 * 11 10 9 14 14 N 1.31990 * 121.22419 * 0.02562 * 13 11 10 15 15 C 1.31588 * 122.04065 * 359.97438 * 14 13 11 16 16 Br 1.89098 * 119.73363 * 180.02562 * 15 14 13 17 17 H 0.96997 * 120.00010 * 5.13081 * 1 2 3 18 18 H 1.08001 * 120.92379 * 359.70344 * 10 9 7 19 19 H 0.97001 * 119.99806 * 0.02562 * 12 11 10 20 20 H 0.96997 * 120.00540 * 180.02562 * 12 11 10 21 21 H 1.07998 * 119.39074 * 180.02562 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0571 -1.2299 -0.2558 9 6 1.3419 -2.4125 0.3366 10 6 0.1898 -2.3915 1.1487 11 6 -0.4261 -3.5984 1.4416 12 7 -1.5707 -3.6310 2.2429 13 6 0.1086 -4.7789 0.9296 14 7 1.1896 -4.7684 0.1723 15 6 1.8143 -3.6524 -0.1373 16 35 3.3578 -3.7132 -1.2281 17 1 -0.4850 0.8367 -0.0751 18 1 -0.2019 -1.4610 1.5324 19 1 -1.9384 -2.8062 2.5970 20 1 -1.9973 -4.4783 2.4449 21 1 -0.3704 -5.7199 1.1565 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306235347.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:52 Heat of formation + Delta-G solvation = 17.076760 kcal Electronic energy + Delta-G solvation = -10171.000311 eV Core-core repulsion = 8092.157179 eV Total energy + Delta-G solvation = -2078.843132 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.43126 -34.35560 -33.83318 -30.61809 -29.68159 -27.10593 -25.55512 -21.93350 -20.80535 -17.57188 -16.29452 -15.53824 -14.98110 -14.70840 -13.75231 -12.96806 -12.85798 -11.81181 -11.56247 -11.39443 -11.06869 -10.68034 -10.56306 -10.09577 -9.45520 -9.14994 -8.97575 -8.21157 -7.89806 -6.94832 -6.52777 -4.60902 2.60638 2.90174 3.00009 3.04928 3.06921 3.16149 3.81744 4.52645 4.77768 5.52112 6.08684 6.47840 6.63579 6.85291 7.00353 7.46322 7.49595 7.74739 8.09770 8.44392 8.55443 8.59924 8.69172 9.41383 9.98240 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.015738 C = 0.009024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.355973 B = 1778.695975 C = 3101.943018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.434 4.434 8 H 0.096 0.904 9 C 0.122 3.878 10 C -0.209 4.209 11 C 0.183 3.817 12 N -0.884 5.884 13 C -0.087 4.087 14 N -0.416 5.416 15 C -0.023 4.023 16 Br -0.073 7.073 17 H 0.284 0.716 18 H 0.132 0.868 19 H 0.390 0.610 20 H 0.386 0.614 21 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -0.794 1.118 1.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.463 4.463 8 H 0.114 0.886 9 C 0.114 3.886 10 C -0.241 4.241 11 C 0.079 3.921 12 N -0.424 5.424 13 C -0.250 4.250 14 N -0.125 5.125 15 C -0.244 4.244 16 Br 0.009 6.991 17 H 0.095 0.905 18 H 0.150 0.850 19 H 0.217 0.783 20 H 0.213 0.787 21 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.597 -1.454 0.408 2.198 hybrid contribution -0.830 1.498 0.717 1.857 sum 0.767 0.044 1.125 1.363 Atomic orbital electron populations 1.69803 1.07807 1.29805 1.33056 1.26036 0.94804 1.01724 0.91845 0.86196 0.80687 0.79780 0.79622 1.19088 1.20009 1.17996 1.19823 0.98403 0.90156 1.37925 0.88598 1.17906 0.90836 0.91617 0.88206 1.21042 1.01187 0.95414 1.06499 1.18716 0.87209 0.95382 0.90805 1.42243 1.30963 1.10060 1.59167 1.21149 0.99331 0.95033 1.09524 1.66411 1.06199 1.30428 1.09414 1.22114 1.00168 0.91307 1.10813 1.96275 1.36091 1.99003 1.67726 0.90520 0.85021 0.78314 0.78736 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.06 10.91 55.55 0.61 -18.45 14 2 C 0.08 1.82 5.20 -17.34 -0.09 1.73 14 3 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 14 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 14 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 14 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 14 7 C -0.43 -11.12 8.48 -37.76 -0.32 -11.44 14 8 H 0.10 2.39 6.88 -52.48 -0.36 2.03 14 9 C 0.12 3.23 5.58 -106.67 -0.60 2.63 14 10 C -0.21 -5.25 8.65 -38.40 -0.33 -5.58 14 11 C 0.18 4.11 6.77 -83.69 -0.57 3.55 14 12 N -0.88 -15.18 9.10 32.46 0.30 -14.89 14 13 C -0.09 -2.00 11.05 -17.07 -0.19 -2.19 14 14 N -0.42 -10.56 10.29 -10.76 -0.11 -10.67 14 15 C -0.02 -0.60 7.24 -16.65 -0.12 -0.72 14 16 Br -0.07 -1.65 32.26 -68.01 -2.19 -3.84 14 17 H 0.28 6.26 8.30 -40.82 -0.34 5.92 14 18 H 0.13 3.32 6.24 -52.49 -0.33 2.99 14 19 H 0.39 6.11 8.85 -40.82 -0.36 5.75 14 20 H 0.39 5.48 8.85 -40.82 -0.36 5.12 14 21 H 0.12 2.45 8.06 -52.49 -0.42 2.03 14 LS Contribution 213.63 15.07 3.22 3.22 Total: -1.00 -27.75 213.63 -6.40 -34.14 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -0.97 Total: 9.66 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.21 Total: -12.03 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.79 Total: -44.00 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 35 Polarization: -1.65 SS G_CDS: -2.19 Total: -3.84 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -27.75 -6.40 -34.14 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306235347.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.220 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds