Wall clock time and date at job start Mon Mar 30 2020 05:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86801 * 120.00059 * 2 1 4 4 H 1.48497 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47008 * 299.99153 * 3 2 1 6 6 H 1.48496 * 109.47209 * 59.99953 * 3 2 1 7 7 C 1.39932 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99473 * 161.97000 * 7 2 1 9 9 C 1.41116 * 120.00321 * 341.96959 * 7 2 1 10 10 C 1.40666 * 120.73042 * 335.78416 * 9 7 2 11 11 N 1.31441 * 120.48332 * 180.02562 * 10 9 7 12 12 C 1.32297 * 122.23161 * 0.02562 * 11 10 9 13 13 C 1.38058 * 121.44434 * 359.73555 * 12 11 10 14 14 Br 1.89097 * 120.34863 * 180.26766 * 13 12 11 15 15 C 1.39288 * 119.30343 * 0.52124 * 13 12 11 16 16 N 1.38453 * 120.99953 * 179.77293 * 15 13 12 17 17 H 0.97002 * 119.99255 * 0.02562 * 1 2 3 18 18 H 1.08006 * 119.75600 * 0.02562 * 10 9 7 19 19 H 1.08001 * 119.27684 * 180.02562 * 12 11 10 20 20 H 0.97001 * 120.00209 * 179.71970 * 16 15 13 21 21 H 0.97005 * 120.00360 * 359.71384 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 0.0006 5 1 1.8843 2.3963 -1.2126 6 1 1.8841 2.3964 1.2125 7 6 2.0084 -1.2119 0.0005 8 1 3.0486 -1.2350 -0.2889 9 6 1.3547 -2.4038 0.3793 10 6 0.2232 -2.3690 1.2143 11 7 -0.3816 -3.4822 1.5645 12 6 0.0356 -4.6699 1.1576 13 6 1.1343 -4.8036 0.3324 14 35 1.6991 -6.5162 -0.2367 15 6 1.8255 -3.6641 -0.0724 16 7 2.9346 -3.7577 -0.8958 17 1 -0.4849 0.8401 -0.0004 18 1 -0.1514 -1.4205 1.5702 19 1 -0.4979 -5.5540 1.4742 20 1 3.4028 -2.9543 -1.1721 21 1 3.2437 -4.6267 -1.1963 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306241726.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:36 Heat of formation + Delta-G solvation = 0.970332 kcal Electronic energy + Delta-G solvation = -10199.798866 eV Core-core repulsion = 8120.257306 eV Total energy + Delta-G solvation = -2079.541559 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.36486 -36.10825 -35.70128 -32.70929 -31.02437 -29.50624 -27.41557 -23.39816 -22.91767 -19.21100 -18.29712 -18.01544 -16.70384 -15.52015 -15.36123 -14.72204 -14.65026 -14.40649 -13.36127 -12.97532 -12.68343 -12.35847 -12.22010 -11.83493 -11.65682 -11.21056 -11.05507 -9.89771 -9.42970 -8.82120 -8.60602 -6.24844 0.63322 0.92529 1.03987 1.43235 1.52512 1.57953 2.21083 2.73241 3.24409 3.65044 4.21865 4.48786 4.73046 5.09263 5.14872 5.29875 5.57398 5.97069 6.30539 6.55313 6.76909 6.87181 7.17270 7.79515 8.31359 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.056839 B = 0.008238 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.498670 B = 3397.986366 C = 3814.973453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.472 4.472 8 H 0.090 0.910 9 C -0.003 4.003 10 C 0.024 3.976 11 N -0.516 5.516 12 C 0.026 3.974 13 C -0.201 4.201 14 Br -0.054 7.054 15 C 0.173 3.827 16 N -0.851 5.851 17 H 0.291 0.709 18 H 0.138 0.862 19 H 0.148 0.852 20 H 0.403 0.597 21 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -5.844 -2.318 8.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.502 4.502 8 H 0.108 0.892 9 C -0.011 4.011 10 C -0.134 4.134 11 N -0.227 5.227 12 C -0.135 4.135 13 C -0.289 4.289 14 Br 0.029 6.971 15 C 0.059 3.941 16 N -0.393 5.393 17 H 0.101 0.899 18 H 0.155 0.845 19 H 0.165 0.835 20 H 0.234 0.766 21 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.917 -6.245 -1.986 8.193 hybrid contribution 0.845 0.979 -0.632 1.439 sum 5.762 -5.266 -2.618 8.233 Atomic orbital electron populations 1.69860 1.09156 1.30898 1.35078 1.26756 0.95411 1.04582 0.91364 0.85072 0.79501 0.76007 0.78643 1.17651 1.19415 1.19396 1.19461 0.98366 0.91300 1.41092 0.89223 1.18480 0.95904 0.91727 0.95008 1.22641 0.97025 0.94950 0.98758 1.67230 1.31664 0.98806 1.24987 1.21920 0.95996 0.95203 1.00388 1.22028 1.05076 0.89517 1.12307 1.96357 1.90288 1.20356 1.90119 1.17996 0.90587 0.92317 0.93176 1.41930 1.30907 1.11305 1.55200 0.89851 0.84521 0.83517 0.76626 0.77096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.42 10.98 21.83 0.24 -41.18 14 2 C 0.03 1.61 5.15 85.24 0.44 2.05 14 3 Si 0.99 35.61 29.60 68.60 2.03 37.64 14 4 H -0.25 -8.73 7.11 99.48 0.71 -8.03 14 5 H -0.27 -9.42 7.11 99.48 0.71 -8.72 14 6 H -0.27 -9.58 7.11 99.48 0.71 -8.88 14 7 C -0.47 -23.10 8.58 23.39 0.20 -22.90 14 8 H 0.09 4.02 6.76 -2.91 -0.02 4.00 14 9 C 0.00 -0.17 5.60 -21.07 -0.12 -0.29 14 10 C 0.02 1.32 9.90 85.34 0.84 2.17 14 11 N -0.52 -26.78 10.33 -193.96 -2.00 -28.78 14 12 C 0.03 1.21 10.91 84.58 0.92 2.13 14 13 C -0.20 -8.76 6.25 22.48 0.14 -8.62 14 14 Br -0.05 -1.80 32.27 -20.37 -0.66 -2.46 14 15 C 0.17 7.92 6.83 39.26 0.27 8.19 14 16 N -0.85 -31.50 8.94 -49.99 -0.45 -31.94 14 17 H 0.29 13.22 8.30 -92.71 -0.77 12.45 14 18 H 0.14 7.68 6.16 -2.91 -0.02 7.67 14 19 H 0.15 5.97 8.06 -2.91 -0.02 5.95 14 20 H 0.40 14.07 7.18 -92.71 -0.67 13.40 14 21 H 0.40 12.75 7.36 -92.70 -0.68 12.07 14 Total: -1.00 -55.87 210.47 1.80 -54.06 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.06 Total: 29.92 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 2.70 Total: -17.26 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -2.21 Total: -101.91 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Atomic # 35 Polarization: -1.80 SS G_CDS: -0.66 Total: -2.46 kcal Total: -55.87 1.80 -54.06 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306241726.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.034 kcal (2) G-P(sol) polarization free energy of solvation -55.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds