Wall clock time and date at job start Mon Mar 30 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48492 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46653 * 299.99702 * 3 2 1 6 6 H 1.48494 * 109.47178 * 59.99586 * 3 2 1 7 7 C 1.39941 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99620 * 195.20290 * 7 2 1 9 9 C 1.41382 * 119.99974 * 15.19925 * 7 2 1 10 10 C 1.40796 * 120.63329 * 24.84331 * 9 7 2 11 11 N 1.31460 * 120.56206 * 179.97438 * 10 9 7 12 12 C 1.32064 * 122.09012 * 359.97438 * 11 10 9 13 13 C 1.39167 * 121.22729 * 0.25674 * 12 11 10 14 14 N 1.39790 * 120.36615 * 179.74470 * 13 12 11 15 15 C 1.38848 * 119.26937 * 359.51259 * 13 12 11 16 16 Br 1.89101 * 120.93988 * 180.19531 * 15 13 12 17 17 H 0.96995 * 119.99629 * 0.02562 * 1 2 3 18 18 H 1.07996 * 119.72302 * 359.97438 * 10 9 7 19 19 H 1.07993 * 119.38226 * 179.97438 * 12 11 10 20 20 H 0.96996 * 119.99821 * 0.02562 * 14 13 12 21 21 H 0.96998 * 120.00180 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3963 -1.2126 6 1 1.8837 2.3964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0597 -1.2282 0.2458 9 6 1.3382 -2.4151 -0.3199 10 6 0.1784 -2.3998 -1.1181 11 7 -0.4431 -3.5193 -1.4157 12 6 -0.0165 -4.6936 -0.9878 13 6 1.1186 -4.8020 -0.1899 14 7 1.5511 -6.0538 0.2574 15 6 1.8196 -3.6535 0.1529 16 35 3.3711 -3.7466 1.2299 17 1 -0.4849 0.8400 -0.0004 18 1 -0.2039 -1.4604 -1.4891 19 1 -0.5613 -5.5860 -1.2583 20 1 1.0595 -6.8530 0.0116 21 1 2.3428 -6.1232 0.8135 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306263019.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:39 Heat of formation + Delta-G solvation = 17.767926 kcal Electronic energy + Delta-G solvation = -10196.028318 eV Core-core repulsion = 8117.215157 eV Total energy + Delta-G solvation = -2078.813161 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.41766 -34.58654 -33.57254 -31.24261 -28.96669 -27.38402 -25.60049 -21.40222 -21.23983 -17.60658 -16.48986 -15.37310 -14.98532 -14.82706 -13.70194 -13.03542 -12.79892 -11.64030 -11.53904 -11.29338 -11.19587 -10.75688 -10.42024 -10.28676 -9.86899 -9.35228 -8.97511 -8.04702 -7.75583 -7.00186 -6.61609 -4.61241 2.59336 2.86979 3.00900 3.06131 3.08122 3.13730 3.81048 4.55090 4.68990 5.58902 6.12499 6.48458 6.53675 6.93315 7.01145 7.20929 7.46731 7.83901 8.15856 8.26208 8.47962 8.60343 8.65976 9.72651 9.95690 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.029072 B = 0.013380 C = 0.009372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.883287 B = 2092.212185 C = 2986.850593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.430 4.430 8 H 0.094 0.906 9 C 0.115 3.885 10 C 0.016 3.984 11 N -0.440 5.440 12 C -0.113 4.113 13 C 0.219 3.781 14 N -0.883 5.883 15 C -0.241 4.241 16 Br -0.097 7.097 17 H 0.287 0.713 18 H 0.156 0.844 19 H 0.121 0.879 20 H 0.389 0.611 21 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -3.676 2.010 6.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.112 0.888 9 C 0.107 3.893 10 C -0.155 4.155 11 N -0.148 5.148 12 C -0.269 4.269 13 C 0.112 3.888 14 N -0.425 5.425 15 C -0.330 4.330 16 Br -0.014 7.014 17 H 0.098 0.902 18 H 0.173 0.827 19 H 0.138 0.862 20 H 0.216 0.784 21 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.484 -3.556 1.893 6.028 hybrid contribution 0.822 0.328 0.542 1.038 sum 5.307 -3.228 2.435 6.672 Atomic orbital electron populations 1.69795 1.07751 1.30043 1.32369 1.26065 0.94837 1.01881 0.91785 0.86114 0.81089 0.80040 0.78834 1.17986 1.19342 1.19661 1.19833 0.97930 0.90170 1.38055 0.88847 1.18202 0.91912 0.90886 0.88255 1.22908 0.96223 0.95028 1.01318 1.66961 1.30054 0.98460 1.19283 1.21170 0.99486 0.95494 1.10743 1.18259 0.93222 0.84603 0.92711 1.42475 1.33988 1.05300 1.60701 1.21230 1.00879 0.95283 1.15639 1.96212 1.37481 1.98406 1.69254 0.90172 0.82720 0.86197 0.78447 0.78013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.10 10.85 55.55 0.60 -18.50 14 2 C 0.08 1.79 5.20 -17.34 -0.09 1.70 14 3 Si 0.92 17.82 29.59 -169.99 -5.03 12.79 14 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 14 6 H -0.27 -5.21 7.11 56.52 0.40 -4.80 14 7 C -0.43 -10.95 8.54 -37.75 -0.32 -11.28 14 8 H 0.09 2.32 6.98 -52.49 -0.37 1.96 14 9 C 0.11 3.02 5.59 -106.67 -0.60 2.43 14 10 C 0.02 0.42 9.89 -16.74 -0.17 0.25 14 11 N -0.44 -11.36 10.33 -12.40 -0.13 -11.49 14 12 C -0.11 -2.65 11.04 -17.11 -0.19 -2.84 14 13 C 0.22 4.93 6.77 -83.66 -0.57 4.37 14 14 N -0.88 -15.54 9.05 32.47 0.29 -15.24 14 15 C -0.24 -5.85 6.34 -38.30 -0.24 -6.09 14 16 Br -0.10 -2.00 30.82 -68.01 -2.10 -4.10 14 17 H 0.29 6.34 8.30 -40.82 -0.34 6.00 14 18 H 0.16 4.16 6.09 -52.49 -0.32 3.84 14 19 H 0.12 2.47 8.06 -52.49 -0.42 2.04 14 20 H 0.39 5.64 8.85 -40.82 -0.36 5.28 14 21 H 0.39 6.49 7.36 -40.82 -0.30 6.19 14 LS Contribution 210.96 15.07 3.18 3.18 Total: -1.00 -27.35 210.96 -6.25 -33.60 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.90 Total: 11.23 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.17 Total: -11.46 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.77 Total: -45.24 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 35 Polarization: -2.00 SS G_CDS: -2.10 Total: -4.10 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -27.35 -6.25 -33.60 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306263019.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.371 kcal (2) G-P(sol) polarization free energy of solvation -27.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds