Wall clock time and date at job start Mon Mar 30 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48492 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46653 * 299.99702 * 3 2 1 6 6 H 1.48494 * 109.47178 * 59.99586 * 3 2 1 7 7 C 1.39941 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99620 * 195.20290 * 7 2 1 9 9 C 1.41382 * 119.99974 * 15.19925 * 7 2 1 10 10 C 1.40796 * 120.63329 * 24.84331 * 9 7 2 11 11 N 1.31460 * 120.56206 * 179.97438 * 10 9 7 12 12 C 1.32064 * 122.09012 * 359.97438 * 11 10 9 13 13 C 1.39167 * 121.22729 * 0.25674 * 12 11 10 14 14 N 1.39790 * 120.36615 * 179.74470 * 13 12 11 15 15 C 1.38848 * 119.26937 * 359.51259 * 13 12 11 16 16 Br 1.89101 * 120.93988 * 180.19531 * 15 13 12 17 17 H 0.96995 * 119.99629 * 0.02562 * 1 2 3 18 18 H 1.07996 * 119.72302 * 359.97438 * 10 9 7 19 19 H 1.07993 * 119.38226 * 179.97438 * 12 11 10 20 20 H 0.96996 * 119.99821 * 0.02562 * 14 13 12 21 21 H 0.96998 * 120.00180 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3963 -1.2126 6 1 1.8837 2.3964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0597 -1.2282 0.2458 9 6 1.3382 -2.4151 -0.3199 10 6 0.1784 -2.3998 -1.1181 11 7 -0.4431 -3.5193 -1.4157 12 6 -0.0165 -4.6936 -0.9878 13 6 1.1186 -4.8020 -0.1899 14 7 1.5511 -6.0538 0.2574 15 6 1.8196 -3.6535 0.1529 16 35 3.3711 -3.7466 1.2299 17 1 -0.4849 0.8400 -0.0004 18 1 -0.2039 -1.4604 -1.4891 19 1 -0.5613 -5.5860 -1.2583 20 1 1.0595 -6.8530 0.0116 21 1 2.3428 -6.1232 0.8135 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306263019.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:39 Heat of formation + Delta-G solvation = -0.600715 kcal Electronic energy + Delta-G solvation = -10196.824842 eV Core-core repulsion = 8117.215157 eV Total energy + Delta-G solvation = -2079.609685 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.25347 -36.34070 -35.35186 -33.05259 -30.76645 -29.13436 -27.47071 -23.23863 -23.09123 -19.42995 -18.18360 -17.14909 -16.79373 -16.46908 -15.45176 -14.70977 -14.63668 -13.37577 -13.33589 -13.06824 -12.85723 -12.58631 -12.11029 -11.97471 -11.54141 -11.08509 -10.69991 -9.94800 -9.62943 -8.78134 -8.32216 -6.51319 0.79450 1.01020 1.26281 1.42146 1.54526 1.58224 2.19668 2.73060 3.14855 3.67985 4.33789 4.62172 4.75798 5.14692 5.16222 5.36478 5.64917 5.97044 6.35174 6.46246 6.72329 6.81774 7.11660 7.81874 8.20761 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.029072 B = 0.013380 C = 0.009372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.883287 B = 2092.212185 C = 2986.850593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.455 4.455 8 H 0.093 0.907 9 C 0.091 3.909 10 C -0.019 4.019 11 N -0.454 5.454 12 C -0.123 4.123 13 C 0.226 3.774 14 N -0.861 5.861 15 C -0.266 4.266 16 Br -0.066 7.066 17 H 0.296 0.704 18 H 0.141 0.859 19 H 0.150 0.850 20 H 0.407 0.593 21 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.791 -4.053 2.519 7.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.111 0.889 9 C 0.084 3.916 10 C -0.188 4.188 11 N -0.162 5.162 12 C -0.280 4.280 13 C 0.116 3.884 14 N -0.403 5.403 15 C -0.357 4.357 16 Br 0.017 6.983 17 H 0.108 0.892 18 H 0.158 0.842 19 H 0.167 0.833 20 H 0.237 0.763 21 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.378 -3.969 2.410 7.105 hybrid contribution 0.547 0.284 0.427 0.750 sum 5.925 -3.684 2.837 7.532 Atomic orbital electron populations 1.69837 1.09206 1.31504 1.32386 1.26915 0.95494 1.04880 0.90715 0.85071 0.79524 0.75525 0.79237 1.17820 1.18467 1.18823 1.20031 0.98042 0.91017 1.39285 0.88854 1.18463 0.92227 0.92249 0.88656 1.22710 0.97710 0.94940 1.03447 1.66907 1.30494 0.99091 1.19678 1.21683 1.00072 0.95669 1.10616 1.18301 0.92486 0.85877 0.91699 1.42353 1.34021 1.04348 1.59618 1.21527 1.02444 0.95353 1.16351 1.96188 1.35512 1.98325 1.68239 0.89248 0.84214 0.83295 0.76273 0.77081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.23 10.85 21.83 0.24 -39.99 14 2 C 0.04 1.82 5.20 85.25 0.44 2.26 14 3 Si 0.99 36.05 29.59 68.60 2.03 38.08 14 4 H -0.25 -9.16 7.11 99.48 0.71 -8.45 14 5 H -0.26 -9.10 7.11 99.48 0.71 -8.39 14 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 14 7 C -0.45 -23.32 8.54 23.46 0.20 -23.12 14 8 H 0.09 4.63 6.98 -2.91 -0.02 4.61 14 9 C 0.09 4.86 5.59 -21.19 -0.12 4.74 14 10 C -0.02 -1.06 9.89 85.37 0.84 -0.21 14 11 N -0.45 -23.61 10.33 -193.14 -1.99 -25.60 14 12 C -0.12 -5.62 11.04 84.88 0.94 -4.68 14 13 C 0.23 9.82 6.77 38.24 0.26 10.08 14 14 N -0.86 -27.84 9.05 -51.18 -0.46 -28.31 14 15 C -0.27 -12.76 6.34 23.10 0.15 -12.61 14 16 Br -0.07 -2.64 30.82 -20.37 -0.63 -3.26 14 17 H 0.30 13.18 8.30 -92.71 -0.77 12.41 14 18 H 0.14 7.86 6.09 -2.91 -0.02 7.84 14 19 H 0.15 5.76 8.06 -2.91 -0.02 5.74 14 20 H 0.41 10.40 8.85 -92.71 -0.82 9.58 14 21 H 0.40 12.05 7.36 -92.71 -0.68 11.37 14 Total: -1.00 -58.12 210.96 1.68 -56.44 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.21 Total: 26.18 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 2.71 Total: -23.54 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -2.22 Total: -93.90 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Atomic # 35 Polarization: -2.64 SS G_CDS: -0.63 Total: -3.26 kcal Total: -58.12 1.68 -56.44 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306263019.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.835 kcal (2) G-P(sol) polarization free energy of solvation -58.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds