Wall clock time and date at job start Mon Mar 30 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99393 * 2 1 4 4 H 1.48507 * 109.46713 * 274.97728 * 3 2 1 5 5 H 1.48495 * 109.47710 * 34.98053 * 3 2 1 6 6 H 1.48503 * 109.46689 * 154.98348 * 3 2 1 7 7 C 1.40022 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99890 * 186.29709 * 7 2 1 9 9 C 1.41322 * 119.99901 * 6.30206 * 7 2 1 10 10 C 1.40552 * 119.77901 * 173.69077 * 9 7 2 11 11 C 1.38464 * 119.13441 * 180.24810 * 10 9 7 12 12 Br 1.89104 * 120.67223 * 179.74480 * 11 10 9 13 13 C 1.38743 * 118.65783 * 359.53124 * 11 10 9 14 14 C 1.39709 * 119.47859 * 0.46550 * 13 11 10 15 15 N 1.38833 * 119.57843 * 179.74675 * 14 13 11 16 16 N 1.31995 * 120.84743 * 359.78014 * 14 13 11 17 17 H 0.97004 * 120.00461 * 0.02562 * 1 2 3 18 18 H 1.08005 * 120.43392 * 359.97438 * 10 9 7 19 19 H 1.07999 * 120.26142 * 180.19835 * 13 11 10 20 20 H 0.97001 * 120.00007 * 180.02562 * 15 14 13 21 21 H 0.96998 * 119.99772 * 0.02943 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 2.3835 2.1072 -1.3949 5 1 1.4954 2.6201 0.8026 6 1 3.5876 1.4122 0.5921 7 6 2.0076 -1.2126 0.0005 8 1 3.0827 -1.2153 0.1031 9 6 1.3074 -2.4329 -0.1333 10 6 2.0212 -3.6364 -0.2658 11 6 1.3217 -4.8236 -0.4012 12 35 2.2381 -6.4670 -0.5897 13 6 -0.0651 -4.7837 -0.3914 14 6 -0.7165 -3.5552 -0.2560 15 7 -2.1042 -3.5122 -0.2512 16 7 -0.0296 -2.4348 -0.1333 17 1 -0.4851 0.8400 -0.0004 18 1 3.1013 -3.6346 -0.2664 19 1 -0.6365 -5.6946 -0.4919 20 1 -2.5628 -2.6626 -0.1580 21 1 -2.6151 -4.3319 -0.3410 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306272081.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:02 Heat of formation + Delta-G solvation = 30.010221 kcal Electronic energy + Delta-G solvation = -10089.209664 eV Core-core repulsion = 8010.927369 eV Total energy + Delta-G solvation = -2078.282295 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.30111 -34.20877 -33.11681 -31.31486 -28.69707 -28.45859 -25.56389 -21.34032 -20.99459 -17.60170 -16.11157 -15.46148 -14.72675 -14.54698 -13.58423 -12.96550 -12.79407 -12.05758 -11.34980 -11.12959 -10.93447 -10.65444 -10.63859 -10.17206 -9.80628 -9.47102 -8.87575 -7.94411 -7.68922 -6.74744 -6.47963 -4.62637 2.56919 2.68525 2.86412 3.06555 3.10271 3.19434 3.90693 4.69668 4.77221 5.83516 6.33442 6.57358 6.63808 6.79384 7.08747 7.28169 7.45118 7.60469 8.04843 8.34049 8.55664 8.68371 8.92805 10.09608 10.25669 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.038755 B = 0.008344 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.306281 B = 3354.915398 C = 4064.742607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.424 4.424 8 H 0.088 0.912 9 C 0.295 3.705 10 C -0.284 4.284 11 C 0.021 3.979 12 Br -0.104 7.104 13 C -0.350 4.350 14 C 0.422 3.578 15 N -0.865 5.865 16 N -0.528 5.528 17 H 0.272 0.728 18 H 0.107 0.893 19 H 0.100 0.900 20 H 0.395 0.605 21 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -5.749 -0.723 5.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.456 4.456 8 H 0.106 0.894 9 C 0.167 3.833 10 C -0.310 4.310 11 C -0.063 4.063 12 Br -0.019 7.019 13 C -0.378 4.378 14 C 0.178 3.822 15 N -0.410 5.410 16 N -0.251 5.251 17 H 0.084 0.916 18 H 0.126 0.874 19 H 0.118 0.882 20 H 0.224 0.776 21 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.196 -5.455 -0.699 5.503 hybrid contribution 0.171 0.185 -0.089 0.267 sum 0.367 -5.269 -0.789 5.341 Atomic orbital electron populations 1.70140 1.07278 1.27775 1.27955 1.26082 0.94919 1.01168 0.93506 0.86280 0.80593 0.80678 0.79110 1.19428 1.20107 1.18385 1.19626 0.94821 0.89255 1.41862 0.89414 1.18193 0.86832 0.91265 0.87029 1.21557 0.98989 0.91875 1.18544 1.21220 0.93768 0.88826 1.02507 1.96436 1.77886 1.30534 1.97052 1.20396 0.92352 0.96874 1.28222 1.18478 0.85292 0.89427 0.88985 1.41997 1.03170 1.10792 1.84999 1.68278 1.07822 1.23988 1.24970 0.91639 0.87443 0.88197 0.77621 0.78164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.30 11.49 55.55 0.64 -17.66 14 2 C 0.07 1.72 5.49 -17.35 -0.10 1.62 14 3 Si 0.91 18.15 29.56 -169.99 -5.03 13.12 14 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 14 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 14 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 7 C -0.42 -11.12 9.13 -37.74 -0.34 -11.47 14 8 H 0.09 2.15 7.85 -52.49 -0.41 1.74 14 9 C 0.29 8.00 6.54 -85.01 -0.56 7.44 14 10 C -0.28 -7.08 9.61 -38.63 -0.37 -7.46 14 11 C 0.02 0.49 6.26 -39.31 -0.25 0.25 14 12 Br -0.10 -1.96 33.76 -68.01 -2.30 -4.25 14 13 C -0.35 -8.03 9.73 -38.85 -0.38 -8.41 14 14 C 0.42 10.09 7.74 -155.31 -1.20 8.89 14 15 N -0.86 -16.45 9.06 31.14 0.28 -16.16 14 16 N -0.53 -14.24 7.91 -10.34 -0.08 -14.32 14 17 H 0.27 6.34 8.29 -40.82 -0.34 6.00 14 18 H 0.11 2.52 8.06 -52.48 -0.42 2.10 14 19 H 0.10 2.07 8.06 -52.49 -0.42 1.64 14 20 H 0.40 7.31 8.95 -40.82 -0.37 6.94 14 21 H 0.39 6.04 8.82 -40.82 -0.36 5.68 14 LS Contribution 217.64 15.07 3.28 3.28 Total: -1.00 -28.14 217.64 -7.51 -35.65 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -1.12 Total: 9.48 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.19 Total: -9.13 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.84 Total: -48.15 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 35 Polarization: -1.96 SS G_CDS: -2.30 Total: -4.25 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.14 -7.51 -35.65 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306272081.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.659 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds