Wall clock time and date at job start Mon Mar 30 2020 05:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99393 * 2 1 4 4 H 1.48507 * 109.46713 * 274.97728 * 3 2 1 5 5 H 1.48495 * 109.47710 * 34.98053 * 3 2 1 6 6 H 1.48503 * 109.46689 * 154.98348 * 3 2 1 7 7 C 1.40022 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99890 * 186.29709 * 7 2 1 9 9 C 1.41322 * 119.99901 * 6.30206 * 7 2 1 10 10 C 1.40552 * 119.77901 * 173.69077 * 9 7 2 11 11 C 1.38464 * 119.13441 * 180.24810 * 10 9 7 12 12 Br 1.89104 * 120.67223 * 179.74480 * 11 10 9 13 13 C 1.38743 * 118.65783 * 359.53124 * 11 10 9 14 14 C 1.39709 * 119.47859 * 0.46550 * 13 11 10 15 15 N 1.38833 * 119.57843 * 179.74675 * 14 13 11 16 16 N 1.31995 * 120.84743 * 359.78014 * 14 13 11 17 17 H 0.97004 * 120.00461 * 0.02562 * 1 2 3 18 18 H 1.08005 * 120.43392 * 359.97438 * 10 9 7 19 19 H 1.07999 * 120.26142 * 180.19835 * 13 11 10 20 20 H 0.97001 * 120.00007 * 180.02562 * 15 14 13 21 21 H 0.96998 * 119.99772 * 0.02943 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 2.3835 2.1072 -1.3949 5 1 1.4954 2.6201 0.8026 6 1 3.5876 1.4122 0.5921 7 6 2.0076 -1.2126 0.0005 8 1 3.0827 -1.2153 0.1031 9 6 1.3074 -2.4329 -0.1333 10 6 2.0212 -3.6364 -0.2658 11 6 1.3217 -4.8236 -0.4012 12 35 2.2381 -6.4670 -0.5897 13 6 -0.0651 -4.7837 -0.3914 14 6 -0.7165 -3.5552 -0.2560 15 7 -2.1042 -3.5122 -0.2512 16 7 -0.0296 -2.4348 -0.1333 17 1 -0.4851 0.8400 -0.0004 18 1 3.1013 -3.6346 -0.2664 19 1 -0.6365 -5.6946 -0.4919 20 1 -2.5628 -2.6626 -0.1580 21 1 -2.6151 -4.3319 -0.3410 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306272081.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:01 Heat of formation + Delta-G solvation = 12.246108 kcal Electronic energy + Delta-G solvation = -10089.979974 eV Core-core repulsion = 8010.927369 eV Total energy + Delta-G solvation = -2079.052605 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.14035 -36.00598 -34.87748 -33.12563 -30.46424 -30.27455 -27.43180 -23.20801 -22.80997 -19.45632 -17.86194 -17.21960 -16.43041 -16.33571 -15.36524 -14.67814 -14.65031 -13.78954 -12.99761 -12.85279 -12.73191 -12.44001 -12.33203 -11.84826 -11.56143 -11.09969 -10.62864 -9.76685 -9.57586 -8.51914 -8.31507 -6.56241 0.81385 0.86386 1.04164 1.44186 1.56790 1.58263 2.24713 2.84658 3.15552 3.90943 4.53609 4.76506 4.79109 5.00740 5.25938 5.43964 5.62530 5.80538 6.16330 6.56632 6.74045 7.02326 7.14446 8.26090 8.44058 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.038755 B = 0.008344 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.306281 B = 3354.915398 C = 4064.742607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.457 4.457 8 H 0.092 0.908 9 C 0.264 3.736 10 C -0.308 4.308 11 C 0.013 3.987 12 Br -0.060 7.060 13 C -0.350 4.350 14 C 0.406 3.594 15 N -0.847 5.847 16 N -0.559 5.559 17 H 0.280 0.720 18 H 0.111 0.889 19 H 0.124 0.876 20 H 0.399 0.601 21 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -5.958 -0.835 6.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.110 0.890 9 C 0.136 3.864 10 C -0.333 4.333 11 C -0.073 4.073 12 Br 0.025 6.975 13 C -0.378 4.378 14 C 0.161 3.839 15 N -0.393 5.393 16 N -0.283 5.283 17 H 0.091 0.909 18 H 0.129 0.871 19 H 0.142 0.858 20 H 0.228 0.772 21 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.224 -5.709 -0.813 5.771 hybrid contribution 0.098 0.080 -0.066 0.143 sum 0.322 -5.629 -0.879 5.707 Atomic orbital electron populations 1.70211 1.08821 1.29186 1.28396 1.26977 0.95770 1.04429 0.92498 0.85103 0.79165 0.75680 0.79214 1.18977 1.19174 1.17844 1.19987 0.95335 0.90253 1.43301 0.88981 1.18629 0.87534 0.92523 0.87675 1.21596 0.99218 0.92259 1.20265 1.21496 0.94331 0.90386 1.01046 1.96440 1.77129 1.27104 1.96860 1.20699 0.92621 0.97413 1.27055 1.18875 0.86899 0.89402 0.88683 1.41890 1.01568 1.12037 1.83755 1.68253 1.08126 1.25579 1.26345 0.90923 0.87101 0.85783 0.77230 0.75968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.74 11.49 21.84 0.25 -38.49 14 2 C 0.03 1.30 5.49 85.29 0.47 1.77 14 3 Si 0.99 37.12 29.56 68.60 2.03 39.15 14 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 14 5 H -0.27 -9.55 7.11 99.48 0.71 -8.85 14 6 H -0.25 -9.25 7.11 99.48 0.71 -8.54 14 7 C -0.46 -24.46 9.13 23.46 0.21 -24.25 14 8 H 0.09 4.61 7.85 -2.91 -0.02 4.59 14 9 C 0.26 14.62 6.54 40.18 0.26 14.89 14 10 C -0.31 -15.49 9.61 22.89 0.22 -15.27 14 11 C 0.01 0.57 6.26 22.44 0.14 0.71 14 12 Br -0.06 -2.16 33.76 -20.37 -0.69 -2.85 14 13 C -0.35 -15.57 9.73 22.75 0.22 -15.35 14 14 C 0.41 19.22 7.74 133.38 1.03 20.25 14 15 N -0.85 -31.12 9.06 -55.40 -0.50 -31.62 14 16 N -0.56 -30.53 7.91 -186.63 -1.48 -32.01 14 17 H 0.28 13.07 8.29 -92.71 -0.77 12.30 14 18 H 0.11 5.28 8.06 -2.91 -0.02 5.26 14 19 H 0.12 4.80 8.06 -2.91 -0.02 4.78 14 20 H 0.40 14.38 8.95 -92.71 -0.83 13.55 14 21 H 0.41 11.77 8.82 -92.71 -0.82 10.95 14 Total: -1.00 -59.82 217.64 1.81 -58.01 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.37 Total: 25.06 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 2.56 Total: -17.26 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -1.73 Total: -102.12 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 35 Polarization: -2.16 SS G_CDS: -0.69 Total: -2.85 kcal Total: -59.82 1.81 -58.01 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306272081.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.257 kcal (2) G-P(sol) polarization free energy of solvation -59.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds