Wall clock time and date at job start Mon Mar 30 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48495 * 109.47422 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.47121 * 30.00491 * 3 2 1 6 6 H 1.48499 * 109.46792 * 149.99984 * 3 2 1 7 7 C 1.39975 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99190 * 180.02562 * 7 2 1 9 9 C 1.41047 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.40835 * 119.71398 * 180.22115 * 9 7 2 11 11 C 1.36768 * 119.24750 * 180.29645 * 10 9 7 12 12 C 1.39807 * 118.66072 * 359.48868 * 11 10 9 13 13 N 1.38851 * 120.31608 * 180.27563 * 12 11 10 14 14 C 1.39924 * 119.37276 * 0.25420 * 12 11 10 15 15 Br 1.89103 * 119.64719 * 179.97438 * 14 12 11 16 16 N 1.31351 * 120.70727 * 0.02562 * 14 12 11 17 17 H 0.96993 * 119.99509 * 0.02562 * 1 2 3 18 18 H 1.07997 * 120.37624 * 0.03997 * 10 9 7 19 19 H 1.08002 * 120.67353 * 179.76979 * 11 10 9 20 20 H 0.96997 * 119.99948 * 0.02562 * 13 12 11 21 21 H 0.96998 * 120.00099 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4395 2.6526 0.7001 6 1 3.5396 1.4402 0.7000 7 6 2.0079 -1.2123 0.0005 8 1 3.0880 -1.2122 0.0010 9 6 1.3027 -2.4338 0.0005 10 6 2.0129 -3.6499 0.0058 11 6 1.3195 -4.8287 -0.0004 12 6 -0.0779 -4.7847 -0.0009 13 7 -0.8161 -5.9607 -0.0014 14 6 -0.7254 -3.5443 -0.0005 15 35 -2.6152 -3.4758 -0.0018 16 7 -0.0348 -2.4271 -0.0001 17 1 -0.4849 0.8400 -0.0004 18 1 3.0929 -3.6516 0.0105 19 1 1.8408 -5.7746 -0.0003 20 1 -0.3626 -6.8181 -0.0010 21 1 -1.7855 -5.9248 -0.0021 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306298664.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:00 Heat of formation + Delta-G solvation = 32.653787 kcal Electronic energy + Delta-G solvation = -10146.353432 eV Core-core repulsion = 8068.185770 eV Total energy + Delta-G solvation = -2078.167661 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.44035 -34.50058 -32.73229 -31.32430 -29.21910 -28.35545 -24.75242 -21.87596 -20.95085 -17.59889 -16.21214 -15.73912 -15.05591 -14.11102 -13.54266 -12.93303 -12.64185 -12.25595 -11.27776 -11.20303 -10.97374 -10.56645 -10.19650 -10.03515 -9.96548 -9.32447 -8.94289 -8.13071 -7.75871 -6.79081 -6.36517 -4.29258 2.56880 2.67872 2.89571 3.13676 3.16064 3.21180 4.00817 4.72831 4.89657 5.77839 5.92486 6.36791 6.51004 6.71656 7.12565 7.25999 7.31580 7.69609 8.16032 8.41750 8.64978 8.66826 8.91336 9.88810 10.38814 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.036099 B = 0.010517 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.468147 B = 2661.821123 C = 3427.446829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.436 4.436 8 H 0.084 0.916 9 C 0.233 3.767 10 C -0.218 4.218 11 C -0.118 4.118 12 C 0.054 3.946 13 N -0.888 5.888 14 C 0.100 3.900 15 Br -0.077 7.077 16 N -0.432 5.432 17 H 0.272 0.728 18 H 0.107 0.893 19 H 0.106 0.894 20 H 0.383 0.617 21 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 -5.662 -0.001 6.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.156 4.156 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.469 4.469 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.242 4.242 11 C -0.147 4.147 12 C -0.053 4.053 13 N -0.434 5.434 14 C -0.124 4.124 15 Br 0.005 6.995 16 N -0.145 5.145 17 H 0.083 0.917 18 H 0.125 0.875 19 H 0.124 0.876 20 H 0.209 0.791 21 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.143 -4.570 0.004 6.169 hybrid contribution 1.016 -0.365 -0.008 1.079 sum -3.128 -4.936 -0.005 5.843 Atomic orbital electron populations 1.70139 1.06968 1.27691 1.29564 1.26002 0.94881 1.00865 0.93888 0.86360 0.80374 0.81169 0.79079 1.19568 1.20255 1.18688 1.19380 0.94109 0.89175 1.44273 0.89778 1.18390 0.86722 0.92332 0.92166 1.21462 0.99154 0.92872 1.10732 1.20167 0.91033 0.97775 1.05716 1.17893 0.91134 0.86138 1.10101 1.41870 1.07712 1.04423 1.89353 1.22019 0.90085 0.90467 1.09865 1.96384 1.06286 1.98764 1.98044 1.68253 1.07483 1.23621 1.15156 0.91654 0.87455 0.87638 0.79095 0.78377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.59 11.45 55.55 0.64 -18.95 14 2 C 0.07 1.75 5.50 -17.34 -0.10 1.65 14 3 Si 0.91 18.83 29.56 -169.99 -5.02 13.80 14 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 14 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 14 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 14 7 C -0.44 -11.61 9.12 -37.87 -0.35 -11.95 14 8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 14 9 C 0.23 6.32 6.55 -84.99 -0.56 5.76 14 10 C -0.22 -5.15 9.77 -39.13 -0.38 -5.54 14 11 C -0.12 -2.53 9.96 -39.53 -0.39 -2.93 14 12 C 0.05 1.19 6.80 -83.46 -0.57 0.62 14 13 N -0.89 -15.47 9.00 32.62 0.29 -15.18 14 14 C 0.10 2.48 7.20 -17.13 -0.12 2.35 14 15 Br -0.08 -1.61 32.29 -68.01 -2.20 -3.80 14 16 N -0.43 -11.97 7.80 -9.31 -0.07 -12.04 14 17 H 0.27 6.78 8.29 -40.82 -0.34 6.44 14 18 H 0.11 2.28 8.06 -52.49 -0.42 1.86 14 19 H 0.11 1.90 8.06 -52.49 -0.42 1.48 14 20 H 0.38 5.53 8.84 -40.82 -0.36 5.17 14 21 H 0.39 6.40 7.22 -40.82 -0.29 6.10 14 LS Contribution 214.63 15.07 3.23 3.23 Total: -1.00 -29.00 214.63 -6.64 -35.64 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -1.05 Total: 7.32 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.46 Total: -10.02 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.86 Total: -46.17 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -2.20 Total: -3.80 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.00 -6.64 -35.64 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306298664.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.295 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds