Wall clock time and date at job start Mon Mar 30 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48495 * 109.47422 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.47121 * 30.00491 * 3 2 1 6 6 H 1.48499 * 109.46792 * 149.99984 * 3 2 1 7 7 C 1.39975 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99190 * 180.02562 * 7 2 1 9 9 C 1.41047 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.40835 * 119.71398 * 180.22115 * 9 7 2 11 11 C 1.36768 * 119.24750 * 180.29645 * 10 9 7 12 12 C 1.39807 * 118.66072 * 359.48868 * 11 10 9 13 13 N 1.38851 * 120.31608 * 180.27563 * 12 11 10 14 14 C 1.39924 * 119.37276 * 0.25420 * 12 11 10 15 15 Br 1.89103 * 119.64719 * 179.97438 * 14 12 11 16 16 N 1.31351 * 120.70727 * 0.02562 * 14 12 11 17 17 H 0.96993 * 119.99509 * 0.02562 * 1 2 3 18 18 H 1.07997 * 120.37624 * 0.03997 * 10 9 7 19 19 H 1.08002 * 120.67353 * 179.76979 * 11 10 9 20 20 H 0.96997 * 119.99948 * 0.02562 * 13 12 11 21 21 H 0.96998 * 120.00099 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4395 2.6526 0.7001 6 1 3.5396 1.4402 0.7000 7 6 2.0079 -1.2123 0.0005 8 1 3.0880 -1.2122 0.0010 9 6 1.3027 -2.4338 0.0005 10 6 2.0129 -3.6499 0.0058 11 6 1.3195 -4.8287 -0.0004 12 6 -0.0779 -4.7847 -0.0009 13 7 -0.8161 -5.9607 -0.0014 14 6 -0.7254 -3.5443 -0.0005 15 35 -2.6152 -3.4758 -0.0018 16 7 -0.0348 -2.4271 -0.0001 17 1 -0.4849 0.8400 -0.0004 18 1 3.0929 -3.6516 0.0105 19 1 1.8408 -5.7746 -0.0003 20 1 -0.3626 -6.8181 -0.0010 21 1 -1.7855 -5.9248 -0.0021 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306298664.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:00 Heat of formation + Delta-G solvation = 12.897284 kcal Electronic energy + Delta-G solvation = -10147.210138 eV Core-core repulsion = 8068.185770 eV Total energy + Delta-G solvation = -2079.024368 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.24807 -36.24932 -34.52724 -33.10885 -30.96904 -30.17395 -26.57512 -23.68442 -22.76569 -19.45704 -17.89283 -17.41098 -16.83318 -15.81227 -15.29231 -14.76493 -14.40279 -13.96326 -12.95922 -12.95354 -12.67133 -12.40916 -11.90994 -11.76845 -11.67850 -11.03322 -10.76455 -9.92103 -9.61017 -8.53483 -8.21263 -6.19438 0.74087 0.90587 1.12490 1.44681 1.55265 1.58519 2.29239 2.87220 3.37776 3.86930 4.24704 4.64084 4.73995 4.93214 5.33707 5.41629 5.56503 5.92084 6.24983 6.72113 6.85447 7.02265 7.28275 8.03872 8.56505 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.036099 B = 0.010517 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.468147 B = 2661.821123 C = 3427.446829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.023 3.977 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.474 4.474 8 H 0.092 0.908 9 C 0.193 3.807 10 C -0.219 4.219 11 C -0.120 4.120 12 C 0.072 3.928 13 N -0.869 5.869 14 C 0.056 3.944 15 Br -0.053 7.053 16 N -0.466 5.466 17 H 0.273 0.727 18 H 0.127 0.873 19 H 0.149 0.851 20 H 0.402 0.598 21 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 -6.776 0.008 7.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.197 4.197 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.507 4.507 8 H 0.110 0.890 9 C 0.063 3.937 10 C -0.243 4.243 11 C -0.150 4.150 12 C -0.036 4.036 13 N -0.416 5.416 14 C -0.168 4.168 15 Br 0.030 6.970 16 N -0.180 5.180 17 H 0.084 0.916 18 H 0.145 0.855 19 H 0.166 0.834 20 H 0.232 0.768 21 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.584 -5.761 0.013 6.785 hybrid contribution 0.762 -0.274 -0.013 0.810 sum -2.822 -6.035 0.000 6.662 Atomic orbital electron populations 1.70270 1.08688 1.28529 1.31684 1.26874 0.95615 1.04287 0.92908 0.85205 0.79020 0.76284 0.79134 1.19099 1.19956 1.17777 1.19731 0.94670 0.90112 1.46217 0.89034 1.18880 0.87307 0.93947 0.93606 1.21730 1.00273 0.92651 1.09607 1.20603 0.90952 0.98890 1.04506 1.18104 0.91817 0.86740 1.06981 1.41797 1.08062 1.03972 1.87734 1.22545 0.91629 0.91037 1.11545 1.96349 1.03862 1.98774 1.98041 1.68192 1.08202 1.25437 1.16201 0.91609 0.85538 0.83377 0.76817 0.77592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.94 11.45 21.83 0.25 -42.69 14 2 C 0.02 1.20 5.50 85.27 0.47 1.66 14 3 Si 0.98 39.19 29.56 68.60 2.03 41.22 14 4 H -0.27 -10.29 7.11 99.48 0.71 -9.59 14 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 14 6 H -0.25 -9.63 7.11 99.48 0.71 -8.93 14 7 C -0.47 -25.66 9.12 23.38 0.21 -25.44 14 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 14 9 C 0.19 10.60 6.55 40.18 0.26 10.86 14 10 C -0.22 -10.11 9.77 22.56 0.22 -9.89 14 11 C -0.12 -4.84 9.96 22.31 0.22 -4.62 14 12 C 0.07 3.03 6.80 38.82 0.26 3.29 14 13 N -0.87 -27.45 9.00 -50.70 -0.46 -27.91 14 14 C 0.06 2.72 7.20 85.17 0.61 3.34 14 15 Br -0.05 -2.16 32.29 -20.37 -0.66 -2.82 14 16 N -0.47 -26.24 7.80 -183.36 -1.43 -27.67 14 17 H 0.27 14.07 8.29 -92.71 -0.77 13.30 14 18 H 0.13 5.19 8.06 -2.91 -0.02 5.16 14 19 H 0.15 4.64 8.06 -2.91 -0.02 4.61 14 20 H 0.40 9.91 8.84 -92.71 -0.82 9.09 14 21 H 0.39 11.86 7.22 -92.71 -0.67 11.19 14 Total: -1.00 -63.03 214.63 1.79 -61.24 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.21 Total: 19.42 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 2.26 Total: -20.80 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -1.64 Total: -98.26 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 35 Polarization: -2.16 SS G_CDS: -0.66 Total: -2.82 kcal Total: -63.03 1.79 -61.24 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306298664.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.137 kcal (2) G-P(sol) polarization free energy of solvation -63.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds