Wall clock time and date at job start Mon Mar 30 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86798 * 119.99621 * 2 1 4 4 H 1.48504 * 109.46986 * 239.99872 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00142 * 3 2 1 7 7 C 1.40014 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.41376 * 119.99824 * 0.27892 * 7 2 1 10 10 N 1.33753 * 119.81202 * 359.45174 * 9 7 2 11 11 C 1.31480 * 121.70533 * 179.70632 * 10 9 7 12 12 C 1.38541 * 121.13468 * 0.56928 * 11 10 9 13 13 C 1.39577 * 119.49083 * 359.72266 * 12 11 10 14 14 N 1.39289 * 120.78224 * 180.02562 * 13 12 11 15 15 C 1.39207 * 118.43154 * 359.97438 * 13 12 11 16 16 Br 1.89097 * 120.57027 * 179.97438 * 15 13 12 17 17 H 0.97005 * 120.00077 * 0.02562 * 1 2 3 18 18 H 1.07998 * 119.43148 * 180.30740 * 11 10 9 19 19 H 1.08002 * 120.25377 * 179.74016 * 12 11 10 20 20 H 0.97005 * 120.00005 * 179.97438 * 14 13 12 21 21 H 0.97002 * 120.00179 * 359.96903 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2125 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3008 -2.4369 -0.0049 10 7 -0.0368 -2.4325 0.0006 11 6 -0.7314 -3.5488 -0.0099 12 6 -0.1031 -4.7835 -0.0153 13 6 1.2913 -4.8449 -0.0155 14 7 1.9508 -6.0717 -0.0214 15 6 2.0073 -3.6511 -0.0107 16 35 3.8982 -3.6637 -0.0099 17 1 -0.4850 0.8401 -0.0004 18 1 -1.8104 -3.5024 -0.0100 19 1 -0.6878 -5.6916 -0.0197 20 1 2.9204 -6.1011 -0.0219 21 1 1.4406 -6.8967 -0.0251 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306321565.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:09 Heat of formation + Delta-G solvation = 27.764053 kcal Electronic energy + Delta-G solvation = -10201.895907 eV Core-core repulsion = 8123.516210 eV Total energy + Delta-G solvation = -2078.379696 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.26025 -34.56918 -33.19965 -30.85624 -28.83820 -27.68871 -25.59132 -21.27570 -21.18884 -17.63203 -16.46891 -15.47711 -14.79275 -13.99640 -13.58266 -12.99692 -12.68938 -12.29152 -11.28427 -11.27921 -10.86369 -10.54253 -10.36669 -10.07821 -9.78355 -9.20572 -8.89264 -7.58590 -7.53658 -6.84389 -6.46650 -4.62102 2.68055 3.05646 3.07931 3.11296 3.23265 3.27311 3.93010 4.68001 4.72498 5.85448 6.12490 6.35228 6.66053 6.88169 7.09944 7.27657 7.33799 7.66493 8.24094 8.26541 8.51483 8.61103 8.85921 10.08020 10.25586 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.013578 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.615062 B = 2061.681077 C = 3008.448344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.414 4.414 8 H 0.096 0.904 9 C 0.294 3.706 10 N -0.500 5.500 11 C 0.165 3.835 12 C -0.380 4.380 13 C 0.291 3.709 14 N -0.880 5.880 15 C -0.312 4.312 16 Br -0.105 7.105 17 H 0.275 0.725 18 H 0.123 0.877 19 H 0.098 0.902 20 H 0.392 0.608 21 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 -4.848 -0.037 6.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.158 4.158 3 Si 0.732 3.268 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.444 4.444 8 H 0.114 0.886 9 C 0.170 3.830 10 N -0.214 5.214 11 C -0.005 4.005 12 C -0.410 4.410 13 C 0.180 3.820 14 N -0.421 5.421 15 C -0.399 4.399 16 Br -0.023 7.023 17 H 0.086 0.914 18 H 0.140 0.860 19 H 0.116 0.884 20 H 0.221 0.779 21 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.316 -3.777 -0.026 5.735 hybrid contribution 0.462 -0.602 -0.014 0.759 sum 4.778 -4.378 -0.040 6.481 Atomic orbital electron populations 1.70150 1.07308 1.28140 1.26945 1.26148 0.94899 1.01318 0.93425 0.86364 0.80166 0.80077 0.80224 1.18680 1.20143 1.18669 1.19916 0.95182 0.89077 1.40227 0.88573 1.18173 0.87943 0.90186 0.86656 1.68931 1.05967 1.26207 1.20336 1.22383 0.98801 0.88315 0.90978 1.20760 0.91367 0.98588 1.30254 1.17354 0.91277 0.84375 0.89014 1.42474 1.08800 1.04926 1.85921 1.21831 0.86196 0.95419 1.36479 1.96155 1.08709 1.98693 1.98734 0.91389 0.85968 0.88417 0.77900 0.78493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.57 11.46 55.55 0.64 -17.93 14 2 C 0.07 1.75 5.50 -17.34 -0.10 1.66 14 3 Si 0.91 18.65 29.56 -169.99 -5.02 13.62 14 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 14 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 14 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 14 7 C -0.41 -11.12 8.79 -37.72 -0.33 -11.46 14 8 H 0.10 2.47 6.37 -52.49 -0.33 2.14 14 9 C 0.29 8.09 6.55 -84.99 -0.56 7.53 14 10 N -0.50 -13.73 7.86 -11.19 -0.09 -13.81 14 11 C 0.16 3.95 11.17 -17.59 -0.20 3.76 14 12 C -0.38 -8.47 10.00 -38.97 -0.39 -8.86 14 13 C 0.29 6.55 6.80 -83.61 -0.57 5.98 14 14 N -0.88 -15.60 9.04 32.52 0.29 -15.31 14 15 C -0.31 -7.73 6.32 -38.38 -0.24 -7.97 14 16 Br -0.11 -2.21 30.46 -68.01 -2.07 -4.29 14 17 H 0.27 6.53 8.29 -40.82 -0.34 6.20 14 18 H 0.12 2.56 8.06 -52.49 -0.42 2.14 14 19 H 0.10 1.89 8.06 -52.49 -0.42 1.47 14 20 H 0.39 6.57 7.37 -40.82 -0.30 6.27 14 21 H 0.39 5.70 8.86 -40.82 -0.36 5.33 14 LS Contribution 211.84 15.07 3.19 3.19 Total: -1.00 -28.85 211.84 -6.42 -35.27 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -0.98 Total: 8.61 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.38 Total: -9.36 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.84 Total: -47.05 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Atomic # 35 Polarization: -2.21 SS G_CDS: -2.07 Total: -4.29 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -28.85 -6.42 -35.27 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306321565.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.038 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds