Wall clock time and date at job start Mon Mar 30 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86798 * 119.99621 * 2 1 4 4 H 1.48504 * 109.46986 * 239.99872 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00142 * 3 2 1 7 7 C 1.40014 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.41376 * 119.99824 * 0.27892 * 7 2 1 10 10 N 1.33753 * 119.81202 * 359.45174 * 9 7 2 11 11 C 1.31480 * 121.70533 * 179.70632 * 10 9 7 12 12 C 1.38541 * 121.13468 * 0.56928 * 11 10 9 13 13 C 1.39577 * 119.49083 * 359.72266 * 12 11 10 14 14 N 1.39289 * 120.78224 * 180.02562 * 13 12 11 15 15 C 1.39207 * 118.43154 * 359.97438 * 13 12 11 16 16 Br 1.89097 * 120.57027 * 179.97438 * 15 13 12 17 17 H 0.97005 * 120.00077 * 0.02562 * 1 2 3 18 18 H 1.07998 * 119.43148 * 180.30740 * 11 10 9 19 19 H 1.08002 * 120.25377 * 179.74016 * 12 11 10 20 20 H 0.97005 * 120.00005 * 179.97438 * 14 13 12 21 21 H 0.97002 * 120.00179 * 359.96903 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2125 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3008 -2.4369 -0.0049 10 7 -0.0368 -2.4325 0.0006 11 6 -0.7314 -3.5488 -0.0099 12 6 -0.1031 -4.7835 -0.0153 13 6 1.2913 -4.8449 -0.0155 14 7 1.9508 -6.0717 -0.0214 15 6 2.0073 -3.6511 -0.0107 16 35 3.8982 -3.6637 -0.0099 17 1 -0.4850 0.8401 -0.0004 18 1 -1.8104 -3.5024 -0.0100 19 1 -0.6878 -5.6916 -0.0197 20 1 2.9204 -6.1011 -0.0219 21 1 1.4406 -6.8967 -0.0251 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306321565.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:09 Heat of formation + Delta-G solvation = 8.313784 kcal Electronic energy + Delta-G solvation = -10202.739334 eV Core-core repulsion = 8123.516210 eV Total energy + Delta-G solvation = -2079.223123 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.07681 -36.30518 -35.01326 -32.66960 -30.62374 -29.46199 -27.46677 -23.10334 -23.00922 -19.45568 -18.15691 -17.24669 -16.46708 -15.76405 -15.35346 -14.70555 -14.52667 -14.04422 -13.01506 -12.94392 -12.74469 -12.21142 -12.09559 -11.80558 -11.51803 -11.00084 -10.65659 -9.45012 -9.39605 -8.52980 -8.30968 -6.56195 0.84595 1.29387 1.41685 1.42645 1.53950 1.59746 2.23935 2.86697 3.15942 3.93656 4.35950 4.62440 4.88424 5.11605 5.28812 5.49046 5.51619 5.92285 6.31196 6.53673 6.78608 6.94457 7.12799 8.22379 8.43240 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.013578 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.615062 B = 2061.681077 C = 3008.448344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.027 3.973 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.450 4.450 8 H 0.098 0.902 9 C 0.265 3.735 10 N -0.540 5.540 11 C 0.147 3.853 12 C -0.375 4.375 13 C 0.288 3.712 14 N -0.860 5.860 15 C -0.340 4.340 16 Br -0.078 7.078 17 H 0.281 0.719 18 H 0.145 0.855 19 H 0.131 0.869 20 H 0.399 0.601 21 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.802 -5.476 -0.045 7.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.196 4.196 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.115 0.885 9 C 0.141 3.859 10 N -0.256 5.256 11 C -0.020 4.020 12 C -0.404 4.404 13 C 0.174 3.826 14 N -0.402 5.402 15 C -0.427 4.427 16 Br 0.005 6.995 17 H 0.092 0.908 18 H 0.163 0.837 19 H 0.149 0.851 20 H 0.229 0.771 21 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.893 -4.473 -0.033 6.629 hybrid contribution 0.282 -0.600 -0.012 0.663 sum 5.175 -5.073 -0.046 7.247 Atomic orbital electron populations 1.70232 1.08821 1.29367 1.27989 1.27004 0.95690 1.04488 0.92466 0.85287 0.78843 0.75620 0.80239 1.18254 1.18929 1.18235 1.20198 0.95455 0.90121 1.42226 0.88451 1.18587 0.88550 0.91554 0.87233 1.68862 1.06535 1.28074 1.22112 1.22867 0.99996 0.88504 0.90676 1.21086 0.91708 0.99230 1.28385 1.17499 0.91620 0.85337 0.88103 1.42344 1.09274 1.04177 1.84381 1.22052 0.88174 0.95625 1.36851 1.96120 1.06043 1.98666 1.98716 0.90818 0.83740 0.85099 0.77131 0.76355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.83 11.46 21.84 0.25 -39.58 14 2 C 0.03 1.37 5.50 85.28 0.47 1.84 14 3 Si 0.98 38.28 29.56 68.60 2.03 40.31 14 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 14 5 H -0.27 -9.72 7.11 99.48 0.71 -9.02 14 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 14 7 C -0.45 -24.52 8.79 23.47 0.21 -24.31 14 8 H 0.10 5.05 6.37 -2.91 -0.02 5.03 14 9 C 0.27 14.75 6.55 40.17 0.26 15.01 14 10 N -0.54 -30.06 7.86 -189.30 -1.49 -31.55 14 11 C 0.15 6.97 11.17 84.82 0.95 7.92 14 12 C -0.37 -15.95 10.00 22.67 0.23 -15.72 14 13 C 0.29 12.45 6.80 38.51 0.26 12.71 14 14 N -0.86 -28.03 9.04 -51.02 -0.46 -28.49 14 15 C -0.34 -16.63 6.32 23.05 0.15 -16.48 14 16 Br -0.08 -3.19 30.46 -20.37 -0.62 -3.81 14 17 H 0.28 13.56 8.29 -92.70 -0.77 12.80 14 18 H 0.15 5.94 8.06 -2.91 -0.02 5.91 14 19 H 0.13 4.60 8.06 -2.91 -0.02 4.57 14 20 H 0.40 12.28 7.37 -92.70 -0.68 11.59 14 21 H 0.41 10.45 8.86 -92.71 -0.82 9.63 14 Total: -1.00 -61.84 211.84 2.01 -59.83 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.22 Total: 22.33 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 2.52 Total: -19.03 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -1.70 Total: -99.62 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Atomic # 35 Polarization: -3.19 SS G_CDS: -0.62 Total: -3.81 kcal Total: -61.84 2.01 -59.83 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306321565.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.141 kcal (2) G-P(sol) polarization free energy of solvation -61.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds