Wall clock time and date at job start Mon Mar 30 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00122 * 2 1 4 4 H 1.48509 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47294 * 299.99865 * 3 2 1 6 6 H 1.48499 * 109.46962 * 60.00027 * 3 2 1 7 7 C 1.38811 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99577 * 180.02562 * 7 2 1 9 9 O 1.34852 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34740 * 117.00369 * 180.02562 * 9 7 2 11 11 O 1.21513 * 119.99445 * 359.97438 * 10 9 7 12 12 C 1.47590 * 120.00262 * 179.97438 * 10 9 7 13 13 C 1.40025 * 120.53994 * 359.97438 * 12 10 9 14 14 C 1.38965 * 118.23113 * 179.72719 * 13 12 10 15 15 N 1.39817 * 120.40126 * 179.97438 * 14 13 12 16 16 C 1.39026 * 119.19867 * 359.97438 * 14 13 12 17 17 N 1.31871 * 121.02247 * 0.02562 * 16 14 13 18 18 C 1.31793 * 121.94970 * 359.97438 * 17 16 14 19 19 Cl 1.73602 * 119.66060 * 180.02562 * 18 17 16 20 20 H 0.97008 * 119.99851 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.88284 * 359.70382 * 13 12 10 22 22 H 0.96999 * 119.99395 * 0.02562 * 15 14 13 23 23 H 0.96996 * 120.00040 * 180.02562 * 15 14 13 24 24 H 1.07997 * 119.48768 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0081 -1.2022 0.0005 8 1 3.0881 -1.2022 0.0010 9 8 1.3339 -2.3700 0.0005 10 6 2.0676 -3.5001 0.0016 11 8 3.2811 -3.4365 0.0021 12 6 1.3976 -4.8151 0.0023 13 6 0.0000 -4.9015 0.0023 14 6 -0.5806 -6.1641 -0.0029 15 7 -1.9718 -6.3032 -0.0026 16 6 0.2387 -7.2873 -0.0085 17 7 1.5523 -7.1704 -0.0084 18 6 2.1478 -5.9947 -0.0035 19 17 3.8817 -5.9100 -0.0044 20 1 -0.4850 0.8401 -0.0004 21 1 -0.6105 -4.0107 0.0066 22 1 -2.5379 -5.5155 0.0010 23 1 -2.3708 -7.1873 -0.0058 24 1 -0.2075 -8.2708 -0.0130 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306342533.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:08 Heat of formation + Delta-G solvation = -41.202487 kcal Electronic energy + Delta-G solvation = -14650.738452 eV Core-core repulsion = 11783.795828 eV Total energy + Delta-G solvation = -2866.942624 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14418 -38.64779 -36.17582 -35.14546 -34.75925 -32.40218 -31.88769 -28.70562 -25.84183 -24.19335 -22.89310 -20.49531 -17.95541 -17.64784 -17.03161 -16.72995 -15.73663 -15.01663 -14.85465 -14.58653 -14.30860 -13.85172 -13.17699 -12.73950 -12.21423 -11.95092 -11.70902 -11.29543 -10.69782 -10.58800 -10.42929 -10.42376 -9.90233 -9.77316 -9.30893 -8.69598 -8.66563 -7.58051 -6.53648 -4.13676 0.92075 1.45946 2.40705 3.07950 3.15263 3.22931 3.46891 3.73879 3.83784 4.20151 4.35753 4.80265 5.02830 5.08236 5.19646 5.29506 5.97719 6.10602 6.44771 6.72569 7.26437 7.31492 7.63342 7.85510 7.95016 8.65063 8.95821 9.75807 10.64029 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.007708 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.197523 B = 3631.561550 C = 4643.912205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.945 3.055 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.367 4.367 8 H 0.101 0.899 9 O -0.205 6.205 10 C 0.428 3.572 11 O -0.525 6.525 12 C -0.071 4.071 13 C -0.102 4.102 14 C 0.158 3.842 15 N -0.868 5.868 16 C 0.047 3.953 17 N -0.447 5.447 18 C 0.153 3.847 19 Cl -0.006 7.006 20 H 0.271 0.729 21 H 0.158 0.842 22 H 0.404 0.596 23 H 0.400 0.600 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 -10.194 -0.006 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.443 4.443 8 H 0.119 0.881 9 O -0.112 6.112 10 C 0.274 3.726 11 O -0.421 6.421 12 C -0.076 4.076 13 C -0.133 4.133 14 C 0.051 3.949 15 N -0.409 5.409 16 C -0.116 4.116 17 N -0.156 5.156 18 C -0.014 4.014 19 Cl 0.022 6.978 20 H 0.081 0.919 21 H 0.176 0.824 22 H 0.233 0.767 23 H 0.228 0.772 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.562 -10.728 -0.009 11.304 hybrid contribution -0.498 1.435 0.004 1.519 sum -4.061 -9.293 -0.005 10.141 Atomic orbital electron populations 1.69977 1.06115 1.27891 1.45500 1.25398 0.95882 0.99009 0.96166 0.85564 0.79623 0.79677 0.78171 1.18716 1.20088 1.20092 1.21420 0.92744 0.79559 1.50580 0.88143 1.83868 1.39290 1.13196 1.74843 1.20306 0.86051 0.84919 0.81339 1.90732 1.14183 1.87316 1.49888 1.19818 0.92968 0.92494 1.02347 1.21495 0.93678 0.97074 1.01034 1.18760 0.85799 0.94351 0.96013 1.42305 1.02429 1.11126 1.85001 1.22134 0.87511 0.97417 1.04525 1.66895 1.11259 1.25869 1.11623 1.21367 0.88266 0.88256 1.03509 1.98406 1.05153 1.97959 1.96266 0.91934 0.82446 0.76708 0.77191 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.07 13.67 55.49 0.76 -23.31 14 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 14 3 Si 0.95 20.72 29.55 -169.99 -5.02 15.69 14 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 14 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 14 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 14 7 C -0.37 -10.58 9.65 30.94 0.30 -10.28 14 8 H 0.10 2.92 6.86 -52.49 -0.36 2.56 14 9 O -0.20 -5.73 9.06 -21.66 -0.20 -5.93 14 10 C 0.43 10.86 7.83 34.55 0.27 11.13 14 11 O -0.52 -14.10 13.23 -19.28 -0.26 -14.36 14 12 C -0.07 -1.49 5.89 -104.83 -0.62 -2.11 14 13 C -0.10 -1.80 9.60 -38.64 -0.37 -2.17 14 14 C 0.16 2.17 6.78 -83.65 -0.57 1.60 14 15 N -0.87 -8.11 9.10 32.47 0.30 -7.82 14 16 C 0.05 0.65 11.04 -17.24 -0.19 0.46 14 17 N -0.45 -7.72 10.32 -9.84 -0.10 -7.82 14 18 C 0.15 3.03 7.31 -16.99 -0.12 2.91 14 19 Cl -0.01 -0.13 26.18 -51.86 -1.36 -1.49 14 20 H 0.27 6.93 8.31 -40.82 -0.34 6.59 14 21 H 0.16 2.83 7.70 -52.49 -0.40 2.43 14 22 H 0.40 3.44 8.85 -40.82 -0.36 3.08 14 23 H 0.40 2.55 8.85 -40.82 -0.36 2.18 14 24 H 0.16 1.55 8.06 -52.49 -0.42 1.13 14 LS Contribution 244.67 15.07 3.69 3.69 Total: -1.00 -32.39 244.67 -4.63 -37.02 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -1.04 Total: 1.77 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.40 Total: 2.54 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.95 Total: -38.95 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.45 Total: -20.29 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.36 Total: -1.49 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.39 -4.63 -37.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342533.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.178 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds