Wall clock time and date at job start Mon Mar 30 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00122 * 2 1 4 4 H 1.48509 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47294 * 299.99865 * 3 2 1 6 6 H 1.48499 * 109.46962 * 60.00027 * 3 2 1 7 7 C 1.38811 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99577 * 180.02562 * 7 2 1 9 9 O 1.34852 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34740 * 117.00369 * 180.02562 * 9 7 2 11 11 O 1.21513 * 119.99445 * 359.97438 * 10 9 7 12 12 C 1.47590 * 120.00262 * 179.97438 * 10 9 7 13 13 C 1.40025 * 120.53994 * 359.97438 * 12 10 9 14 14 C 1.38965 * 118.23113 * 179.72719 * 13 12 10 15 15 N 1.39817 * 120.40126 * 179.97438 * 14 13 12 16 16 C 1.39026 * 119.19867 * 359.97438 * 14 13 12 17 17 N 1.31871 * 121.02247 * 0.02562 * 16 14 13 18 18 C 1.31793 * 121.94970 * 359.97438 * 17 16 14 19 19 Cl 1.73602 * 119.66060 * 180.02562 * 18 17 16 20 20 H 0.97008 * 119.99851 * 0.02562 * 1 2 3 21 21 H 1.07997 * 120.88284 * 359.70382 * 13 12 10 22 22 H 0.96999 * 119.99395 * 0.02562 * 15 14 13 23 23 H 0.96996 * 120.00040 * 180.02562 * 15 14 13 24 24 H 1.07997 * 119.48768 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0081 -1.2022 0.0005 8 1 3.0881 -1.2022 0.0010 9 8 1.3339 -2.3700 0.0005 10 6 2.0676 -3.5001 0.0016 11 8 3.2811 -3.4365 0.0021 12 6 1.3976 -4.8151 0.0023 13 6 0.0000 -4.9015 0.0023 14 6 -0.5806 -6.1641 -0.0029 15 7 -1.9718 -6.3032 -0.0026 16 6 0.2387 -7.2873 -0.0085 17 7 1.5523 -7.1704 -0.0084 18 6 2.1478 -5.9947 -0.0035 19 17 3.8817 -5.9100 -0.0044 20 1 -0.4850 0.8401 -0.0004 21 1 -0.6105 -4.0107 0.0066 22 1 -2.5379 -5.5155 0.0010 23 1 -2.3708 -7.1873 -0.0058 24 1 -0.2075 -8.2708 -0.0130 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306342533.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:08 Heat of formation + Delta-G solvation = -65.420481 kcal Electronic energy + Delta-G solvation = -14651.788623 eV Core-core repulsion = 11783.795828 eV Total energy + Delta-G solvation = -2867.992795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.63773 -40.49922 -37.68608 -37.10194 -35.96015 -34.37667 -33.45605 -29.90810 -27.82309 -25.76268 -24.32088 -22.19293 -19.90250 -19.29186 -18.33604 -18.12649 -17.36810 -16.70968 -16.32444 -16.26873 -15.93182 -15.39996 -14.80951 -14.27750 -13.72642 -13.62913 -13.28588 -13.11466 -12.40517 -12.32429 -12.13118 -12.00623 -11.81835 -11.28262 -10.82254 -10.68700 -10.49587 -8.68888 -8.57383 -6.31939 -0.52134 0.11208 0.96026 1.35627 1.36327 1.53435 1.78492 2.05899 2.55143 2.64576 2.77016 3.01438 3.58708 3.73742 3.82268 3.91124 4.62185 4.72731 4.95810 5.14946 5.23592 5.80389 6.26287 6.59850 6.62329 6.88101 6.91723 7.71007 8.63058 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.007708 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.197523 B = 3631.561550 C = 4643.912205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.000 4.000 3 Si 1.017 2.983 4 H -0.266 1.266 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.413 4.413 8 H 0.084 0.916 9 O -0.229 6.229 10 C 0.429 3.571 11 O -0.547 6.547 12 C -0.100 4.100 13 C -0.114 4.114 14 C 0.184 3.816 15 N -0.840 5.840 16 C 0.071 3.929 17 N -0.450 5.450 18 C 0.135 3.865 19 Cl -0.023 7.023 20 H 0.280 0.720 21 H 0.147 0.853 22 H 0.412 0.588 23 H 0.421 0.579 24 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 -11.614 -0.013 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.202 4.202 3 Si 0.836 3.164 4 H -0.190 1.190 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.102 0.898 9 O -0.137 6.137 10 C 0.276 3.724 11 O -0.444 6.444 12 C -0.105 4.105 13 C -0.145 4.145 14 C 0.073 3.927 15 N -0.381 5.381 16 C -0.093 4.093 17 N -0.160 5.160 18 C -0.031 4.031 19 Cl 0.006 6.994 20 H 0.090 0.910 21 H 0.165 0.835 22 H 0.243 0.757 23 H 0.254 0.746 24 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.450 -12.181 -0.016 13.344 hybrid contribution -0.133 1.565 0.005 1.570 sum -5.583 -10.616 -0.010 11.994 Atomic orbital electron populations 1.70040 1.07498 1.29458 1.46108 1.26505 0.96936 1.02068 0.94644 0.84570 0.77840 0.74727 0.79262 1.18988 1.18370 1.18382 1.21544 0.92424 0.80824 1.54107 0.89822 1.83888 1.39769 1.13718 1.76299 1.21222 0.86140 0.85959 0.79064 1.90686 1.15390 1.87967 1.50332 1.19610 0.94485 0.90290 1.06148 1.21404 0.92283 0.98650 1.02141 1.18690 0.87720 0.92664 0.93626 1.42316 1.00492 1.13015 1.82283 1.23069 0.86230 0.99498 1.00517 1.66990 1.12942 1.24249 1.11831 1.21263 0.87732 0.88662 1.05401 1.98387 1.06544 1.98057 1.96428 0.91026 0.83497 0.75730 0.74627 0.76949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.12 13.67 21.63 0.30 -50.82 14 2 C 0.00 -0.03 5.49 84.89 0.47 0.44 14 3 Si 1.02 42.92 29.55 68.60 2.03 44.95 14 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 14 5 H -0.26 -10.20 7.11 99.48 0.71 -9.49 14 6 H -0.26 -10.20 7.11 99.48 0.71 -9.50 14 7 C -0.41 -25.00 9.65 67.96 0.66 -24.35 14 8 H 0.08 5.17 6.86 -2.91 -0.02 5.15 14 9 O -0.23 -13.49 9.06 11.28 0.10 -13.38 14 10 C 0.43 22.89 7.83 70.29 0.55 23.44 14 11 O -0.55 -30.97 13.23 19.80 0.26 -30.71 14 12 C -0.10 -4.28 5.89 -20.00 -0.12 -4.40 14 13 C -0.11 -3.94 9.60 22.88 0.22 -3.72 14 14 C 0.18 4.39 6.78 38.23 0.26 4.65 14 15 N -0.84 -11.70 9.10 -51.18 -0.47 -12.16 14 16 C 0.07 1.65 11.04 84.88 0.94 2.58 14 17 N -0.45 -14.46 10.32 -185.05 -1.91 -16.37 14 18 C 0.13 5.31 7.31 85.08 0.62 5.93 14 19 Cl -0.02 -0.93 26.18 -2.72 -0.07 -1.00 14 20 H 0.28 14.43 8.31 -92.70 -0.77 13.66 14 21 H 0.15 5.36 7.70 -2.91 -0.02 5.33 14 22 H 0.41 5.36 8.85 -92.71 -0.82 4.54 14 23 H 0.42 2.81 8.85 -92.71 -0.82 1.99 14 24 H 0.21 2.62 8.06 -2.91 -0.02 2.60 14 Total: -1.00 -74.59 244.67 3.48 -71.11 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -0.36 Total: 3.80 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 3.59 Total: 4.59 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.08 Total: -79.36 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: 0.36 Total: -44.09 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.00 kcal Total: -74.59 3.48 -71.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342533.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.688 kcal (2) G-P(sol) polarization free energy of solvation -74.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds